Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 457 / 8e-165 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 400 / 3e-142 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G34760 399 / 4e-142 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 378 / 1e-133 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT5G38480 356 / 3e-125 RCI1, GRF3 general regulatory factor 3 (.1.2) AT3G02520 355 / 1e-124 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT4G09000 355 / 1e-124 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G35160 353 / 7e-124 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT1G78300 352 / 1e-123 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G16050 340 / 1e-118 GF14UPSILON, GRF5 general regulatory factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026660 [exp] 526 / 0 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10036896 [exp] 497 / 2e-180 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10017650 [exp] 387 / 4e-137 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 384 / 7e-136 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 382 / 1e-132 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 375 / 3e-132 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 375 / 4e-132 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 370 / 1e-130 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10013908 [exp] 372 / 2e-128 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095000 [exp] 462 / 4e-167 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 456 / 2e-164 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.002G097500 [exp] 416 / 6e-149 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 410 / 1e-146 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.011G110900 [exp] 403 / 1e-143 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 398 / 1e-141 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.004G101700 [exp] 363 / 6e-128 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 358 / 6e-126 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.002G099800 [exp] 357 / 2e-125 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 354 / 4e-124 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10004652 pacid=23176403 polypeptide=Lus10004652 locus=Lus10004652.g ID=Lus10004652.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGACGGAGAAGGAAAGGGAGTGCCATGTCTACATGGCCAAGCTCTCCGAACAGGCCGAGCGATACGAAGAAATGGTGGAGTGCATGAAGA AGGTGGCGAAGCTGGACTGTGAACTGACCTTGGAGGAGAGGAACCTTCTCTCCGTCGGATACAAGAACGTGATCGGAGCGCGAAGAGCGTCATGGAGGAT CATGTCGTCGATCGAGCAAAAGGAAGAGTCGAAAGGGAACGAGCAGAACGTGAAGCTGATCAAGAGCTACCGCCAAAAGGTCGAAGACGAACTGGCTCAG ATTTGTCAGGATATACTTTACATCATCGATAAGCATCTCATTCCTTCCTCCGCCCTCGGGGAAGCCACAGTTTTCTACAACAAAATGAAAGGTGACTATT TTCGATATCTCGCTGAGTTCAAGACTGAATCGGAGAGGAAGGATGCAGCTGAGCAATCGCTCAAGGGTTACGAGGCTGCTTCAGCTACAGCAAGCACAGA ACTGCCATCAACACACCCAATAAGGCTTGGACTTGCACTCAACTTCTCGGTGTTCTACTACGAGATCATGAACTCCCCCGAAAGGGCTTGCCATTTGGCC AAGCAGGCCTTTGATGAAGCCATTGCTGAGTTGGACACTTTGAACGAAGAGTCCTACAAGGACAGCACCCTCATTATGCAGCTGTTGAGAGACAATCTCA CTCTCTGGACTTCTGACTTGCCCGAAGATGGAGGTGAGGATAACTTCAAAAGTACTGATGAAGGTGCAGCCAAACCTGCAGAACCCTCAACAGCAGAAAA ATGA
AA sequence Show only first row Show all	>Lus10004652 pacid=23176403 polypeptide=Lus10004652 locus=Lus10004652.g ID=Lus10004652.BGIv1.0 annot-version=v1.0 MSSSTEKERECHVYMAKLSEQAERYEEMVECMKKVAKLDCELTLEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEQNVKLIKSYRQKVEDELAQ ICQDILYIIDKHLIPSSALGEATVFYNKMKGDYFRYLAEFKTESERKDAAEQSLKGYEAASATASTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLA KQAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNFKSTDEGAAKPAEPSTAEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	0	1
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	1.4	0.9651
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	2.4	0.9540
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	4.5	0.9634
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10032010 [exp]	5.3	0.9453
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031270 [exp]	6.9	0.9321
AT2G24960			unknown protein		Lus10042421 [exp]	8.5	0.9545
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	9.2	0.9543
					Lus10017955 [exp]	9.3	0.9569
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034047 [exp]	9.9	0.9172
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	10.0	0.8884

Compare expression of checked genes

Lus10004652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.