Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26520 517 / 0 Cobalamin biosynthesis CobW-like protein (.1) AT1G15730 237 / 4e-74 Cobalamin biosynthesis CobW-like protein (.1) AT1G80480 223 / 1e-68 PTAC17 plastid transcriptionally active 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026658 [exp] 679 / 0 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1) Lus10018172 [exp] 233 / 1e-72 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1) Lus10025665 [exp] 231 / 1e-71 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094100 [exp] 536 / 0 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1) Potri.003G030100 [exp] 228 / 1e-70 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1) Potri.001G133500 [exp] 223 / 4e-69 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1) Potri.001G201400 [exp] 222 / 3e-68 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07683 [flax] [poplar] CobW_C Cobalamin synthesis protein cobW C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02492 [flax] [poplar] cobW CobW/HypB/UreG, nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004653 pacid=23176370 polypeptide=Lus10004653 locus=Lus10004653.g ID=Lus10004653.BGIv1.0 annot-version=v1.0 ATGGAGAACGAAGAAGATAATCCACCCGTCGCCGTCGAAATAAACTCACCGGAATCCTCTTCCGGCAGCCTCCCCAGCTCAGTAAAAGTCCATGAAGATA CCGTATCAGTTGGAGTCACCGTCATCACCGGCTACCTCGGCTCCGGAAAATCCACTCTAGTTAACTATATACTGAACGCTAAACACGGGAAGAGGATCGC TGTGATACTGAACGAGTTCGGAGAAGAGATTGGAGTGGAGAGGGCGATGATCAACGAAGGAAACGGAGGTGCTCTCGTGGAGGAATGGGTTGAGCTTGCC AATGGTTGTGTTTGCTGTACCGTTAAACACAGCTTGGTTCAAGCATTGGAGCAGCTTGTGCAGATGAAGCAAAGACTTGATCATATTTTGATTGAGACGA CGGGATTGGCGAATCCTGCTCCTCTTGCATCTGTTCTTTGGCTGGATGATCAGTTGGAGTCTGCTGTGAAGCTTGACTCTATCATAACTGTTGTGGATGC TAAAAACCTTGGGTTTCAGCTTAAGCAGCAGAAGGACTCTTCCTCATTTCCTGAAGCTGTTTATCAAATAGCATTCGCGGATGTTGTGATTCTTAACAAG GTTGATTTGCTTTCTTCAGAAGGATCTTTGGAAGAGCTCGAGAAGGAAATCCGTGACATCAATTCTCTTGCCAGTATCGTTCGGACTGTTCGATGTCAAG TTGACTTGACAAAGATCCTGGAACGCAATGCATATGATACTGCTCGTGCTACACATTTAGAAGCACTACTGGAGGAAACGAAATCTCTGTCAACCAAAGA TCTACATGGCAGCGGTGTGCGAACTTTATGCATTTCTGAGTCACAGCAGGTTGATCTCGATAAGGTTCTGCTATGGCTGGAGGAGATTCTGTGGGATAAG AAAGACGGGATGGATGTATACCGCTGCAAAGGAGTGTTACACATTCAAAACTCCGATCAATTACATACTTTGCAGGCTGTAAGGGAACTATACGAGATCC TACCCTCTCGGAAATGGAAGAACGAGGAAGCCATTACTAACAAGATAGTTTTCATAGGCCGTAACTTGAACGAGGACATCCTGTCGGAATCTTTCAAAGG CTGCATTTCGATAGCCAATGAATGA
AA sequence Show only first row Show all	>Lus10004653 pacid=23176370 polypeptide=Lus10004653 locus=Lus10004653.g ID=Lus10004653.BGIv1.0 annot-version=v1.0 MENEEDNPPVAVEINSPESSSGSLPSSVKVHEDTVSVGVTVITGYLGSGKSTLVNYILNAKHGKRIAVILNEFGEEIGVERAMINEGNGGALVEEWVELA NGCVCCTVKHSLVQALEQLVQMKQRLDHILIETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLGFQLKQQKDSSSFPEAVYQIAFADVVILNK VDLLSSEGSLEELEKEIRDINSLASIVRTVRCQVDLTKILERNAYDTARATHLEALLEETKSLSTKDLHGSGVRTLCISESQQVDLDKVLLWLEEILWDK KDGMDVYRCKGVLHIQNSDQLHTLQAVRELYEILPSRKWKNEEAITNKIVFIGRNLNEDILSESFKGCISIANE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	0	1
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	6.3	0.9079
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	8.2	0.8860
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	11.5	0.8561
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	13.0	0.8728
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	19.1	0.8803
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	26.0	0.7866
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	28.5	0.8753
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	31.6	0.8567
AT5G48340			unknown protein		Lus10036410 [exp]	33.8	0.8638
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	35.3	0.8163

Compare expression of checked genes

Lus10004653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.