Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 758 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 575 / 0 BGLU41 beta glucosidase 41 (.1) AT3G18080 488 / 2e-169 BGLU44 B-S glucosidase 44 (.1) AT3G18070 466 / 4e-161 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 449 / 3e-154 BGLU17 beta glucosidase 17 (.1.2) AT5G36890 446 / 3e-153 BGLU42 beta glucosidase 42 (.1.2) AT5G24550 436 / 8e-149 BGLU32 beta glucosidase 32 (.1) AT5G24540 434 / 5e-148 BGLU31 beta glucosidase 31 (.1) AT3G60140 430 / 8e-146 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G61820 425 / 1e-144 BGLU46 beta glucosidase 46 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026657 [exp] 882 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037098 [exp] 810 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 800 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10009218 [exp] 592 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 567 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10037987 [exp] 518 / 1e-178 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10031235 [exp] 509 / 2e-177 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 502 / 6e-175 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 491 / 1e-170 AT2G44450 572 / 0.0 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 752 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 740 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 574 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.004G040700 [exp] 484 / 5e-168 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 482 / 5e-167 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.003G211100 [exp] 481 / 1e-166 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 479 / 4e-166 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 475 / 3e-164 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 472 / 4e-163 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 472 / 5e-163 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10004654 pacid=23176384 polypeptide=Lus10004654 locus=Lus10004654.g ID=Lus10004654.BGIv1.0 annot-version=v1.0 ATGGTGACCGCAAGAGTAATACTATTCGCGACGGTCGTTCTAGCTTTGGAGATGGTGGTCTGCTTTTCCCAACCGCAGAGCATCATTAGCAGAGGCAGTT TCCCAAAGGGGTTCGCCTTCGGAACTGCCTCCGCGGCTTTCCAGTACGAAGGAGCAGTTGAAGTTGATGGAAGGGGAGCAACCATTTGGGACACTTACTC TCACACCTTCGGCAAAATCGTCGATTTCAGCAACGCCGATGTAGCTGTCGATCAATACCATCGCTTCGATGATGATATTCGGCTGATGAAGGATATGGGA CTCGATGCTTACCGATTCTCTATCTCATGGACTCGAATTTTTCCTGATGGAAGTGGACAGTTGAATCAAGGAGGAGTGGATCATTACAACAAGTTCATCA ACGCGTTGCTAGCGAATGGAATCGAGCCGTACGTGACATTGTACCATTGGGACCTTCCACAAGCCTTGTACGACCGCTACACCGGATGGCTCGATCCACA AATAGTACGAGATTACGCGGCGTATGCAGAAACATGCTTTAAGAAATTCGGGGACAGGGTGAAGCACTGGATCACGTTCAACGAGCCTCACACGTTCGCA GTCCAGGGCTACGATTCGGGCCTCGCTGCTCCGGGTCGATGCTCGTTTCGATTATGGTGCGGTGAGGGGGACTCCCACACCGAGCCTTACATAGTCGCCC ATCACACGATCCTAGCCCACGCGGCTGCAGCGGATATCTACCGACGAAAATACAAGCCGACCCAGAAGGGGATCCTGGGAGTTTCGTTCGACGTTGTATG GTTCGAGCCGGGGTCCAGCTCCCCTAGCGACGTGGAGGCCGCCCAGCGGGCCCAGGATTTCCAGCTGGGCTGGTTTCTGGACCCGATGATGTTAGGGCAC TACCCGAGCTCGATGAGGAGCAGGGTTGGGGCTCGGTTACCAGAATTTTCCGGTTCGGATGTTTCGTTGGTTAAAGGGTCGTTGGATTTCGTTGGGATTA ATCATTACACGACGTATTATGCAAGCAATAGTTCTTGTGGAATAATTAATTATCTATTGAATGACACTCTTGCTGATTCTGGCACTGTTGCCTACCCGTA CAAAGATGGAAAACCTATTGGTGATCGGGCGAACTCGATATGGTTGTACATAGTACCCGAAGGGATGAGAAGTTTGATGAACTACATCAGGCTTAGATAC GGAAACCCACCCGTCTTCGTGACCGAAAACGGTATGGATGACCCAAACAGCCCTTTCATTCCTATTGAAGATGCATTGAAAGATGATAAGAGGGTCAAGT ACCTCAATGACTATCTCACCAACTTGCTAGCTTCAATCAAGGAGGATGGGTGCAATGTGAAAGGCTATTTTGTGTGGTCTTTGATGGACAATTGGGAATG GGCAGCTGGATACACTTCAAGGTTTGGTCTCTACTTTGTGGACTATGGGAACAACCTCAAGAGATACCCTAAGAATTCTGTTACTTGGCTCAGAAGTTTC TTGGGAAATTCTGGTTAG
AA sequence Show only first row Show all	>Lus10004654 pacid=23176384 polypeptide=Lus10004654 locus=Lus10004654.g ID=Lus10004654.BGIv1.0 annot-version=v1.0 MVTARVILFATVVLALEMVVCFSQPQSIISRGSFPKGFAFGTASAAFQYEGAVEVDGRGATIWDTYSHTFGKIVDFSNADVAVDQYHRFDDDIRLMKDMG LDAYRFSISWTRIFPDGSGQLNQGGVDHYNKFINALLANGIEPYVTLYHWDLPQALYDRYTGWLDPQIVRDYAAYAETCFKKFGDRVKHWITFNEPHTFA VQGYDSGLAAPGRCSFRLWCGEGDSHTEPYIVAHHTILAHAAAADIYRRKYKPTQKGILGVSFDVVWFEPGSSSPSDVEAAQRAQDFQLGWFLDPMMLGH YPSSMRSRVGARLPEFSGSDVSLVKGSLDFVGINHYTTYYASNSSCGIINYLLNDTLADSGTVAYPYKDGKPIGDRANSIWLYIVPEGMRSLMNYIRLRY GNPPVFVTENGMDDPNSPFIPIEDALKDDKRVKYLNDYLTNLLASIKEDGCNVKGYFVWSLMDNWEWAAGYTSRFGLYFVDYGNNLKRYPKNSVTWLRSF LGNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10004654 [exp]	0	1

Compare expression of checked genes

Lus10004654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.