Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26030 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G26922 59 / 3e-09 F-box/RNI-like superfamily protein (.1) AT5G18780 59 / 4e-09 F-box/RNI-like superfamily protein (.1.2) AT1G60400 56 / 3e-08 F-box/RNI-like superfamily protein (.1) AT1G69630 56 / 5e-08 F-box/RNI-like superfamily protein (.1) AT1G16930 54 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 54 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44490 54 / 3e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G66290 53 / 4e-07 F-box/RNI-like superfamily protein (.1) AT1G78760 53 / 5e-07 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011409 [exp] 291 / 1e-94 AT1G69630 74 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10011410 [exp] 220 / 7e-67 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 125 / 2e-31 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006318 [exp] 126 / 2e-30 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10023037 [exp] 118 / 1e-29 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 116 / 3e-28 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 112 / 7e-27 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 110 / 2e-26 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 110 / 3e-26 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 83 / 6e-17 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 83 / 7e-17 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 72 / 3e-13 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 70 / 1e-12 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 66 / 2e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 64 / 1e-10 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 55 / 8e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 53 / 4e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 50 / 3e-06 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 50 / 3e-06 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10004655 pacid=23176365 polypeptide=Lus10004655 locus=Lus10004655.g ID=Lus10004655.BGIv1.0 annot-version=v1.0 ATGAATGGCAATGAATATGACCGATTGGCCACATCCTCTCTTTACTCGACACCAAATCTTCAGTCCAGCCTTCTGTACTGTCACGCCCGTGGAAATCGGC GTGGAAGCACATCTCTGTCCTCAATCTCCGCGGAGATTCCTTCCGAGATTTTTCGACCTACTCGACCTTTCTCGGCAAGATATCGCCCCTTCGCTGCCGT GAGATCAATCTCCACAAGAACTCCGGACCTTGTGTTCTGGTTGCCGAGCTCGAATTGCGATCTGAAAACTCTGACACTATGCAGCGTTTGGACTGCCCTT GAATTCGGTCTCGGCATTCCTATGCTGACGAGTTTGAACTTGTACGATTGTTTGCTCAGTGGGTTGTATTCGGACCCTTTCCGAAAATTCCCCTGTTTGG AGAATCTAATCCTGCACGACTCCAAGGGTTATAGCAATCATGCGAAAGTTTCTGGACTCCAATTGATTAGCTTGAAGATCAGGTTTCCTCGCACGGTCAA GGTCGAAGTAGAAGCACTGAAACTAGAGTCGCTCACTCTTGACTTCCGGTGTGGCAATCTTCCTCGTTTCAGAAAGATGAACGTCCCTTCTCTAGCCCGT CTGAGTCTCTGCGTCGATTCCACATTTACGAGTTACAACGCTGAGGATTTGGAGCCCCTCTTTCGATCTATTCGGAATGTGAAATTTGCAGCGATAAATA ATGTTAGTTTAGACAAAGAATGCGAAGGAGTGGAGGACATATTAATTAGCCTCCTTCTTGGATTGATGACTGGAGAGCAATATGATGATGCTTCATCAGT TGACCGGTTGACCGAGCTTCCGGAGCCGATCATCCACCACATTCTCTCATTCCTCGACGCTAAATCCTCCGTCCAAACCTCTGTACTGTCACGCCCTTGG AAGTCTGCGTGGAAATACTTCTCCGTCCTCAATCTCCACGGACGCTCCTTCCAAAATTTTACTAGTTTCTCGACTTTTCTCGAGAAGATATCATGCCTTC GTTACCGTGAGATCAATCTCCGCAAGATTAGCTACTACGAAGATCCACACAGTAGATCGGACCGTGATCAGGTCGACCTGGTCTTTGAGTATGCAGCGAC CCATGGTCTTGAAGCATCAATCCATGGCGAATTACATCCGGACCACGGGTTAAGGTCGACAAGCTCGAATTGCAATCTGAAAACTGATCTAACATTATAT AGGGTTTGGATTGATGTTGGATCTTGTACAAGTCCTCGTTTTCCTATGCTGACAAGTTTGAAATTGCATGGTTGTTGGTTTGGTTGGTGGTCGGACCTTT TTCAAGAATTTCCGAATTTGAAGAATCTAGTCGTGGATGACTCCATGGATTATGGTGGTGATGTGGACCGGTTTGGACTCCACTCGATTAGCTTGAAGCA CAGATTTTCTAGCCTGGTCAATATCGAAATAGACGCACCGAAACTTGAGTTGCTCACTGTCCACTTACCGAGTGGTGTTGATTTTCCTCATTTCGTAGGA AAGATGAACGTCCCTTCTCTGGCTCGTCTGAGGTTCTACGTCGATCCCACAATTATGAGATCCAAGGTTGAGGATTTAGCGCCCTTTGTCTTCCGATCTT TTCAAAACGTGAAATTTATATCGGTGAATTCTCGTGTTATTCGGAATATAAGTAGTTAG
AA sequence Show only first row Show all	>Lus10004655 pacid=23176365 polypeptide=Lus10004655 locus=Lus10004655.g ID=Lus10004655.BGIv1.0 annot-version=v1.0 MNGNEYDRLATSSLYSTPNLQSSLLYCHARGNRRGSTSLSSISAEIPSEIFRPTRPFSARYRPFAAVRSISTRTPDLVFWLPSSNCDLKTLTLCSVWTAL EFGLGIPMLTSLNLYDCLLSGLYSDPFRKFPCLENLILHDSKGYSNHAKVSGLQLISLKIRFPRTVKVEVEALKLESLTLDFRCGNLPRFRKMNVPSLAR LSLCVDSTFTSYNAEDLEPLFRSIRNVKFAAINNVSLDKECEGVEDILISLLLGLMTGEQYDDASSVDRLTELPEPIIHHILSFLDAKSSVQTSVLSRPW KSAWKYFSVLNLHGRSFQNFTSFSTFLEKISCLRYREINLRKISYYEDPHSRSDRDQVDLVFEYAATHGLEASIHGELHPDHGLRSTSSNCNLKTDLTLY RVWIDVGSCTSPRFPMLTSLKLHGCWFGWWSDLFQEFPNLKNLVVDDSMDYGGDVDRFGLHSISLKHRFSSLVNIEIDAPKLELLTVHLPSGVDFPHFVG KMNVPSLARLRFYVDPTIMRSKVEDLAPFVFRSFQNVKFISVNSRVIRNISS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26030			F-box/RNI-like/FBD-like domain...		Lus10004655 [exp]	0	1

Compare expression of checked genes

Lus10004655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.