Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15490 108 / 4e-29 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT5G39320 107 / 1e-28 UDP-glucose 6-dehydrogenase family protein (.1) AT3G29360 107 / 2e-28 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT1G26570 103 / 3e-27 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT3G01010 57 / 4e-11 UDP-glucose/GDP-mannose dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036886 [exp] 110 / 3e-31 AT5G15490 327 / 3e-111 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10026656 [exp] 111 / 5e-30 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004656 [exp] 111 / 8e-30 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026657 [exp] 110 / 2e-29 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037096 [exp] 110 / 2e-29 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10034703 [exp] 107 / 3e-28 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021626 [exp] 105 / 1e-27 AT5G15490 875 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10036887 [exp] 70 / 2e-15 AT3G29360 444 / 5e-157 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Lus10021639 [exp] 58 / 4e-12 AT1G26570 145 / 6e-43 UDP-glucose dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092000 [exp] 103 / 3e-27 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.008G094300 [exp] 102 / 8e-27 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.010G159800 [exp] 100 / 6e-26 AT5G15490 853 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.004G118600 [exp] 95 / 6e-24 AT5G15490 879 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03721 [flax] [poplar] UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10004657 pacid=23176387 polypeptide=Lus10004657 locus=Lus10004657.g ID=Lus10004657.BGIv1.0 annot-version=v1.0 ATGGTGAAGATATGCTGCATTGGAGCTGGTTATGTTGGTGGGCTGACAATGGCTGTGATTGTTTTGAAATGCCCCAAAGTTCAAGTGGTAGTGGTGGACA TCTCTGTACCAACAATCACTGCTTGGAACAGTGATCACCTCCCGATTTACGAGCCGGGGCTCGATGGTGTGGTGAAGCAATGCAGGGGGAAGAACTTGTT CTTCAGCACTGATACAGCTGGTATCCTGAAGCCGGCATTCGTTTTCGATGGCAGAAACGTTGTTGATGCTGAAAAGCTGAGGAAGATTGGTGGTAAGCCG TTGGATGCTTGGCTCAAGGACATGCCTGCTGTGGCTTAG
AA sequence Show only first row Show all	>Lus10004657 pacid=23176387 polypeptide=Lus10004657 locus=Lus10004657.g ID=Lus10004657.BGIv1.0 annot-version=v1.0 MVKICCIGAGYVGGLTMAVIVLKCPKVQVVVVDISVPTITAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDTAGILKPAFVFDGRNVVDAEKLRKIGGKP LDAWLKDMPAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10004657 [exp]	0	1
					Lus10003285 [exp]	5.6	0.8418
					Lus10004996 [exp]	7.9	0.8418
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	9.0	0.7848
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018099 [exp]	9.3	0.7223
					Lus10000363 [exp]	9.6	0.8418
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	11.1	0.8418
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	12.4	0.8418
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	12.5	0.7002
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	13.6	0.8418
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	14.7	0.8418

Compare expression of checked genes

Lus10004657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.