Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 201 / 7e-59 unknown protein AT1G13880 176 / 5e-50 ELM2 domain-containing protein (.1) AT2G03470 176 / 1e-49 MYB ELM2 domain-containing protein (.1.2) AT4G11400 113 / 1e-26 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 86 / 1e-17 GYRB3 DNA GYRASE B3 (.1) AT2G46040 71 / 6e-13 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026655 [exp] 828 / 0 AT1G26580 237 / 3e-72 unknown protein Lus10037097 [exp] 392 / 1e-131 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 387 / 5e-130 AT1G26580 253 / 1e-77 unknown protein Lus10000680 [exp] 183 / 2e-52 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 174 / 2e-49 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10024636 [exp] 117 / 2e-28 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 112 / 2e-27 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 100 / 4e-22 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 99 / 9e-22 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094400 [exp] 275 / 2e-86 AT1G26580 280 / 3e-88 unknown protein Potri.010G159700 [exp] 265 / 8e-83 AT1G26580 253 / 1e-77 unknown protein Potri.017G091900 [exp] 184 / 1e-52 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 173 / 2e-48 AT1G26580 219 / 2e-65 unknown protein Potri.014G086700 [exp] 114 / 8e-27 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 108 / 6e-26 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 111 / 7e-26 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 110 / 2e-25 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004658 pacid=23176376 polypeptide=Lus10004658 locus=Lus10004658.g ID=Lus10004658.BGIv1.0 annot-version=v1.0 ATGGGATATAAAAGGCTATTTGAAGATACAGACTTCCAAGGGTTTCCCTTAAATCCTTTGAAGCAGGCACGGCAACAGGACCTGAGCAATAGGTCGACTC GGTTTGAAGAAAATTTGTCAGATATCAGTCCTCCTAAGAAACCTGATTCTGCAGTTGACCATTGCGATAAGAATGGAAAACAACTGTGTCATGAGGCATC TGAGAATACTGTTGTCCCCATGAATTGTACTGATGAGGATATAGGCTTCAGATTGGCTGCTTACACTTCCCTGTTTCCAGAATATTATGAGTATAAGGGC CTACAGGAATATGCCTCATTGAACAATGTCGGCATCCCTTATTTGGATCGCTTCCCCAAAAAGCAAGTTGCTCTTGGACGAAACCATCAAGCCAGCATCC CGTCTTTGTTGATGTCGAGCTCGGGAAATGTCGACGAAGAGGAGAAACTAATGGGCACTTGCATCATTCCGATGCCCGATAAAGAATCCATCTCTATTGA AATTGACCAGCTTGGAGGCAGTGGATCCAATTGTCGGTGCCTGGATGCAGGCTCGTTGAGGTGTGTTCGGCAGCATATAGCAGAAGCGCGGGATAAGCTG AAGAAATCCTTGGGTCATGAGAAGTTTGCGGGTTTGGGGTTTCACAACATGGGAGAAGAAGTGTCATGGAAATGGAGCGAGGATGAAGAACGTCTCTTCT GTGCTGTAGTTTATTCGAATCCTGTCTCCCTGGGTCAGAACTTCTGGAAGCACCTCGCACAAGTGTTTCCTTCTCGTTCCGTGAAGGAAATCGTCAGCTA TTATTTCAACGTATTCATGCTTCGCAAGCGAGCAACTCAGAACAGGTCGAGTTTGCTGGACATCGACAGTGATGACGACGAATTGCATGGCTTTGACATT GGCACCTACGAAGGTGAAGAATTGGAAGATGATGACGAAGAAGAAGAAGACGATTCGGCCGTTGAATCCCCTGTTGAAGGTCTTGGTCAATCCAACCGTG GTGAAGACATTGTTACCGAAGATGATGGCGATGAAGACGATGGCGATGATGACATAAGAAAGCGTGCAGAGAACAATGAGGAAGATAACACCACCGTCCA AGACGATTCGTGTACGTCTTTTGAGTTCCAATCGGAGAAGGATGATCCTTACTACCTGATGAACCGGGAGGTAGATGGTCGCGGCTATATGATGGACGTG GCGGAGCCCATGCTGGACTTCCGCAGCAACGAGAAAGTTCAGTATGAGCTATACTCCACTTCAGAAAAAGCCACTCCGGAAAAATCCCTTAACCCTAAAC TTGCTGAGAATGGTGCAACAGTGAAGAAGGTAGACAAGGGTAGTGATGCAGCAGCAGCAGTGGATTTAGTGTCTATGTTGGATTTTCGCGATGAGAAAGC TTGGGACGCAATCTTCCCTGGGTCTGGCTAG
AA sequence Show only first row Show all	>Lus10004658 pacid=23176376 polypeptide=Lus10004658 locus=Lus10004658.g ID=Lus10004658.BGIv1.0 annot-version=v1.0 MGYKRLFEDTDFQGFPLNPLKQARQQDLSNRSTRFEENLSDISPPKKPDSAVDHCDKNGKQLCHEASENTVVPMNCTDEDIGFRLAAYTSLFPEYYEYKG LQEYASLNNVGIPYLDRFPKKQVALGRNHQASIPSLLMSSSGNVDEEEKLMGTCIIPMPDKESISIEIDQLGGSGSNCRCLDAGSLRCVRQHIAEARDKL KKSLGHEKFAGLGFHNMGEEVSWKWSEDEERLFCAVVYSNPVSLGQNFWKHLAQVFPSRSVKEIVSYYFNVFMLRKRATQNRSSLLDIDSDDDELHGFDI GTYEGEELEDDDEEEEDDSAVESPVEGLGQSNRGEDIVTEDDGDEDDGDDDIRKRAENNEEDNTTVQDDSCTSFEFQSEKDDPYYLMNREVDGRGYMMDV AEPMLDFRSNEKVQYELYSTSEKATPEKSLNPKLAENGATVKKVDKGSDAAAAVDLVSMLDFRDEKAWDAIFPGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26580			unknown protein		Lus10004658 [exp]	0	1
AT2G14910			unknown protein		Lus10013888 [exp]	50.6	0.6955
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	60.3	0.6900
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	65.9	0.6826
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	69.0	0.6686
AT3G09840		ATCDC48, CDC48A...	cell division cycle 48 (.1)		Lus10001403 [exp]	69.6	0.6370
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	86.2	0.6759
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	100.0	0.6706
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	108.9	0.6640
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	117.8	0.6249
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	119.2	0.6408

Compare expression of checked genes

Lus10004658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.