Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 125 / 2e-31 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 95 / 3e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 70 / 3e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 69 / 5e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 69 / 1e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 47 / 1e-05 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02040 46 / 2e-05 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G17180 46 / 3e-05 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT3G19580 45 / 4e-05 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G43170 42 / 0.0002 C2H2ZnF AZF3 zinc-finger protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026654 [exp] 637 / 0 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 262 / 9e-83 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10036889 [exp] 160 / 7e-46 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 94 / 9e-23 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 71 / 5e-13 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 71 / 6e-13 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 70 / 1e-12 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 69 / 2e-12 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 64 / 3e-11 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 177 / 3e-50 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 166 / 6e-46 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 71 / 2e-13 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 70 / 4e-13 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 71 / 5e-13 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 69 / 2e-12 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 57 / 6e-09 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 56 / 3e-08 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.004G118100 [exp] 55 / 6e-08 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G125900 [exp] 53 / 1e-07 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004659 pacid=23176405 polypeptide=Lus10004659 locus=Lus10004659.g ID=Lus10004659.BGIv1.0 annot-version=v1.0 ATGGAGACGAATCAGAAGAAGTTCGTATGCAAATTCTGCAACAAGAGGTATCCATGTGGGAAGTCTTTAGGTGGACACATAAGGATCCATCAGAATGGGA ATTACTCACCTTCAGCTAATCATCACTATTTACCTCCTGAAGATGATCATCATCACAAGAAGGATTCTTCATCAGCTGATGGATACATTCTGAGGGAGAA TCCGAAGAAGACTCGGAGGTTCGAGACGAATTTGGCAGCAAATAACAACAACTCTACCAATGGTAATCTGATCCAAGTCTGTAAAGAATGTGGCAAAGGT TTCCAGTCTTTGAAAGCACTGTGTGGACATATGGCTTGCCATTCCAGGAACTACAGCTTCGATGAAGATCGATCGGATGATACGAGTGAGAAGCTGATGA TGGAGGACGATTTGGTACTGATGGATGATCAGAATTCTGATACTGAGACATCAGCTGCTCCTAGTAAAAGGAGGAGATCCAAGAGGATGATGAGGTATAA GAACATTGGTGATACTAATGTTCATTCTTCTTCTGCTTCGATTGCTTCAGATCTGGAGCAAGATAACCAGGAAGAGGTAGCTTTGTGTTTGATGATGCTG TCAAAGGATGCTAGTCTTAAAGGTTTTAATGTGAGCTCTGTTGCTGCTGATTCTTCTGATAATAACTCTGTGGTGACCAAGATGAGAATGAAGGTGATGA AGAACAATGAGAAAAACGACAAGAACAGTTCGAGTTGCTACGATGACGAAGAAAACAGCTTCATGGAGATGAAAGTAGCTAGGAAGAAGCACCAGGTGGT GATCTCTTCTGATAATGATCAGAATTCTGATTCCGGATACTTCAATTATGGTCCTAAGAAAGTTGAAGAGCCAGAGGTGGTTTCTTTCCATGAAAAGAAA CCAGCAAAACCTGTTATTGCTATTAGCAAAACCAACAACTATCACAAGAGAGCTAGGGAGAGCAGTGAAAACATCTACGAGAGCGGGGAGAACAGCTTCG AGACCGAAACAACAAAAACCATTACGAAGAAGGTGAACAATGGGAAGAACCACCAACCTCCAGCAAAGAGCAATAACAAGTTATCAGCAAATGCAGCAGC AACAGCTAAAAAGGCTAAAGTTCATGAGTGTCCATTCTGTTCCAAGGTTTTCAGGTCAGGCCAAGCTTTGGGAGGTCACAAGAGGTCCCATTTTGTTGGA GGAGCTGAGGATACTACTGTGGTGCTCAAGCAACAAGTAGCTGAAATACCAATGATTGATCTCAACCTTCCAGCTCCTGTGGATCATGAAGAACAAGCAA CTGGCTTTGTCACCTGGTAA
AA sequence Show only first row Show all	>Lus10004659 pacid=23176405 polypeptide=Lus10004659 locus=Lus10004659.g ID=Lus10004659.BGIv1.0 annot-version=v1.0 METNQKKFVCKFCNKRYPCGKSLGGHIRIHQNGNYSPSANHHYLPPEDDHHHKKDSSSADGYILRENPKKTRRFETNLAANNNNSTNGNLIQVCKECGKG FQSLKALCGHMACHSRNYSFDEDRSDDTSEKLMMEDDLVLMDDQNSDTETSAAPSKRRRSKRMMRYKNIGDTNVHSSSASIASDLEQDNQEEVALCLMML SKDASLKGFNVSSVAADSSDNNSVVTKMRMKVMKNNEKNDKNSSSCYDDEENSFMEMKVARKKHQVVISSDNDQNSDSGYFNYGPKKVEEPEVVSFHEKK PAKPVIAISKTNNYHKRARESSENIYESGENSFETETTKTITKKVNNGKNHQPPAKSNNKLSANAAATAKKAKVHECPFCSKVFRSGQALGGHKRSHFVG GAEDTTVVLKQQVAEIPMIDLNLPAPVDHEEQATGFVTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004659 [exp]	0	1
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	5.1	0.7757
AT5G42860			unknown protein		Lus10010231 [exp]	6.9	0.7712
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	9.1	0.7752
AT3G57200			unknown protein		Lus10018036 [exp]	15.3	0.7282
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10020863 [exp]	15.5	0.7306
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	16.1	0.7318
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	16.6	0.7707
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	24.2	0.7122
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	25.7	0.7252
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	27.7	0.7461

Compare expression of checked genes

Lus10004659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.