Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13900 806 / 0 Purple acid phosphatases superfamily protein (.1) AT2G03450 784 / 0 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT5G50400 224 / 2e-64 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 219 / 1e-62 Purple acid phosphatases superfamily protein (.1) AT4G24890 204 / 4e-57 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT3G52780 135 / 2e-34 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 115 / 2e-27 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 114 / 7e-27 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 112 / 4e-26 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT4G13700 108 / 9e-25 ATPAP23, PAP23 purple acid phosphatase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026652 [exp] 1153 / 0 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 907 / 0 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036895 [exp] 334 / 6e-110 AT1G13900 311 / 8e-110 Purple acid phosphatases superfamily protein (.1) Lus10036894 [exp] 259 / 1e-82 AT1G13900 266 / 1e-85 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 234 / 7e-68 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 230 / 2e-66 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 215 / 4e-61 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 209 / 4e-59 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019772 [exp] 205 / 1e-55 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160500 [exp] 872 / 0 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 228 / 1e-65 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 214 / 1e-60 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 201 / 4e-56 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 201 / 5e-56 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 196 / 4e-54 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 190 / 5e-52 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 189 / 6e-52 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.011G138200 [exp] 116 / 9e-28 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 113 / 2e-26 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10004661 pacid=23176372 polypeptide=Lus10004661 locus=Lus10004661.g ID=Lus10004661.BGIv1.0 annot-version=v1.0 ATGAAAGCGACGGCAGTCTACCTCACATTCACCACCATCCTCCTCACTTCGGGCATCGTCGTCGCACTCCCCAAACCAACTCTCACCGTCTCCCCCACGC TCCTCAACCGCTCCGGCGACGCCGTCACCGTCACCTGGTCCAACGTCCCCACCCCGTCAAGCCTCGACTGGGTCGGAATCTATTCCCCGCCGGACTCCCG CGCTGACCACTTCATCGGGTACAAATTCCTCTCATCCTCCCCGGGTTGGGAATCCGGGTCGGGCTCCCTATCGATCCCGATCACGAACCTGAGATATAAC TTCTCGTTCCGGATCTTCCGGTGGACGAAAGACGAGATCAACCAGAAGCGCCACGACCACGATCGAAATCCGATCCCTGCGTCGAAGCACCTGCTCGCGG AGTCGGGTCACGTCGGGTTCGGGTCCGGGTCTCCGGAGCAGATCCACTTGGCGTTTACGGATGAGGAGGATGAGATGAGGGTTATGTTCGTGGCTGGAGA TGGAGAGCAGAGGAAAGTGAGGTGGCGGCGGGAGGAAGAAGAGGATGGTGGTGGGGGTTGGGATGACGTGGCGGAGGCGCGTGTGGTTAGGTATGAGAGG GAGGATATGTGTGATTCGCCGGCGAATAGTTCGGTTGGGTGGAGGGATCCTGGGTGGGTTCATGATGCTGTGATGAAAGGTTTGCAGAGAGGGCTAAGGT ACTATTATCAGGTCGGAAGTGACTCAAAGGGATGGAGTGCTACACAGACCTTTGTATCCAGAAACTCAGATGCCAACGAGACGATAGCATTCCTATTCGG CGACATGGGAACGTCAGCACCGTACACAACATTCGTCCGAACACAGACCGAAAGCATCTCGACCGTGAAATGGATCCTCCGCGACATGGAACAACTCGGC GACAAGCCTGCATTCGTCTCTCACATAGGCGACATCAGCTACGCAAATGGCTACTCATGGATATGGGACCATTTCTTCACTCAGATCGAGCCGATCGCTT CGAGACTCCCCTACCACGTCTGCATTGGGAACCACGAATATGACTGGCCTGCTCAGCCGTGGAAGCCTGATTGGGCCTATGCGTACGGGACTGATGGGGG CGGCGAATGTGGAGTTCCGTACAGCTCGAAGTTCAACATGCCTGGTAACTCCTCAGAACCGACCGGAACCAAGGCACCGGATACTATAAACCTTTATTAC TCATTCAATGTCGGTTCGGTTCATTTTGTGTACATGTCGACCGAGACAAACTTCCTTATTGGGAGTCGACAGTACGAGTTCCTTAAGAAGGATCTCAAGT CGGTCAACAGGAGTAAGACTCCGTTCGTCGTGTTCCAGGGGCATCGGCCTATGTACACGACGAGCAAGTTGGATCGAGATGCGCCGATGAGGCAGAAACT TCAAGAGAATTTGGAGCCTTTACTTGTGAGCAACAATGTTACTATTGCTCTTTGGGGCCATGTCCATAGTTATGAGAGGTTTTGTCCTATGAATAATTTT CAATGTAGTGGGAAGAAGAAGACATGGAAAGGGTTTCCTGTTCATATTGTGATTGGAATGGCTGGACAGGATTGGCAGTCTGTTTGGGAACCTAGACCGG ATCACCCCGATATGCCGGTCTTCCCGCAGCCGGAGATTTCCATGTATAGAGGTGGCGAGTTTGGGTACACGAGGCTGTTCGCTACGAGGGAGAAGCTCAC TTTCTCGTACATCGGGAACCACGATGGAACGGTGCATGACATGGTAGAGTTGCTTGCATCTGGTGAAGTAGTTGGTGGAGAAGTCGAAGCGGAAACTCGA GCTGATGATGATGATGGTGATGATTCGAAGTTTTCGAGCTATCTCAAGGGCGGAAGCATTCTGTTGCTCGGAGCTCTGTTAGGGTACCTCGTTGGATTCG TTTCCCATGGTAGGAAGCGGAATCTTGTGCCGAAAAAAGGGGAGTGGACTGCAGTGAAAAGCGAGGAGACATGA
AA sequence Show only first row Show all	>Lus10004661 pacid=23176372 polypeptide=Lus10004661 locus=Lus10004661.g ID=Lus10004661.BGIv1.0 annot-version=v1.0 MKATAVYLTFTTILLTSGIVVALPKPTLTVSPTLLNRSGDAVTVTWSNVPTPSSLDWVGIYSPPDSRADHFIGYKFLSSSPGWESGSGSLSIPITNLRYN FSFRIFRWTKDEINQKRHDHDRNPIPASKHLLAESGHVGFGSGSPEQIHLAFTDEEDEMRVMFVAGDGEQRKVRWRREEEEDGGGGWDDVAEARVVRYER EDMCDSPANSSVGWRDPGWVHDAVMKGLQRGLRYYYQVGSDSKGWSATQTFVSRNSDANETIAFLFGDMGTSAPYTTFVRTQTESISTVKWILRDMEQLG DKPAFVSHIGDISYANGYSWIWDHFFTQIEPIASRLPYHVCIGNHEYDWPAQPWKPDWAYAYGTDGGGECGVPYSSKFNMPGNSSEPTGTKAPDTINLYY SFNVGSVHFVYMSTETNFLIGSRQYEFLKKDLKSVNRSKTPFVVFQGHRPMYTTSKLDRDAPMRQKLQENLEPLLVSNNVTIALWGHVHSYERFCPMNNF QCSGKKKTWKGFPVHIVIGMAGQDWQSVWEPRPDHPDMPVFPQPEISMYRGGEFGYTRLFATREKLTFSYIGNHDGTVHDMVELLASGEVVGGEVEAETR ADDDDGDDSKFSSYLKGGSILLLGALLGYLVGFVSHGRKRNLVPKKGEWTAVKSEET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	2.2	0.9648
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	2.8	0.9694
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	4.0	0.9654
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	4.6	0.9696
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	4.9	0.9398
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	4.9	0.9660
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	5.2	0.9550
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	6.9	0.9571
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	7.9	0.9411
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	9.4	0.9552

Compare expression of checked genes

Lus10004661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.