Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 494 / 3e-177 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 429 / 2e-151 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 125 / 7e-33 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G11080 128 / 1e-32 AtRLP35 receptor like protein 35 (.1) AT1G35710 127 / 3e-32 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G25790 124 / 2e-31 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 124 / 6e-31 ERL2 ERECTA-like 2 (.1) AT4G20140 121 / 4e-30 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 119 / 1e-29 ERL1 ERECTA-like 1 (.1.2) AT5G48940 119 / 2e-29 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026651 [exp] 573 / 0 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10037108 [exp] 550 / 0 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10036961 [exp] 490 / 5e-176 AT5G61240 488 / 1e-175 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 130 / 6e-33 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 127 / 3e-32 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 126 / 8e-32 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 122 / 3e-30 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011609 [exp] 121 / 5e-30 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10005017 [exp] 119 / 2e-29 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093400 [exp] 503 / 0 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G160700 [exp] 500 / 1e-179 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.012G124100 [exp] 139 / 3e-36 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 139 / 4e-36 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 135 / 9e-35 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 132 / 8e-34 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 131 / 1e-33 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G014232 [exp] 131 / 1e-33 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.002G008375 [exp] 129 / 8e-33 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 127 / 5e-32 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10004662 pacid=23176366 polypeptide=Lus10004662 locus=Lus10004662.g ID=Lus10004662.BGIv1.0 annot-version=v1.0 ATGGCGCGTCGATCGCGACCCATCAATCTCCAGTTCCTCTTCCTAGTCCCGCTCTTCTTCTTCTTGAGCACTCCCGCCCTCTCCAAAACCCTCAAACGCG ACGTGAAGGCGCTGAACGAGATCAAGTCGTCGCTGGGATGGAGAGTCGTGTACGCCTGGGTCGGCGACGACCCTTGCGGCGGCGACGGCCTCCAGCCTTG GTCCGGCGTCACCTGCTCCACTCAAGGCGATTACCGCGTCGTCACCGAATTGGAAGTGTATGCAGTGTCGATCGTCGGGCCGGTTCCTACCGCCGTCACC AATCTCTTGGATCTTTCCAGATTGAATCTCTTGGATCTTACCAGATTGGATTTCCACAACAACAAGCTGACAGGGCCGATCCCTCCACAGATTGGAAGAT TGAAGCGTCTCAGGATTCTGAACTTGAGGTGGAACAAGTTGCAAGATTCGATTCCGCCCGAGATTGGTGAACTCAAGAGTCTCACTCATCTGTACTTGAG CTTCAACAATTTCAAAGGAGAGATTCCAAGGGAGCTGGCGAATCTTGCCGAGCTTCGATATCTCTACTTGCAAGAGAATAGATTCTCCGGGAGAGTACCT GCGGAACTCGGAACTTTGCAGAATCTTCGTCACTTAGATATTGGCAATAACCATTTAGTTGGCACTATAAGGGAACTAATCCATATCGAGGGCTGCTTCC CCGCCCTCCGCAACCTCTACCTGAACAACAATTATCTGACTGGAGGAGTTCCTGCACAGTTGGCTAACTTGACAAACTTGGAAATCTTGCACCTATCCTA TAACAAGATGACCGGGTTTATACCCATCCAACTCGCTCATATCCCGAAATTGACCTACCTCTACCTGGATCACAACCAATTCACGGGACGAATCCCCGAT TCATTCTATAAACATCCGTTCTTGAAAGAAATGTACATCGAAGGAAGCTCGTTCAAGCCCGGTGTGAACCCGATTGGCATCCACAAAGTCTTCGAAGTGT CCGATGCAGATTTCGTAGTTTAA
AA sequence Show only first row Show all	>Lus10004662 pacid=23176366 polypeptide=Lus10004662 locus=Lus10004662.g ID=Lus10004662.BGIv1.0 annot-version=v1.0 MARRSRPINLQFLFLVPLFFFLSTPALSKTLKRDVKALNEIKSSLGWRVVYAWVGDDPCGGDGLQPWSGVTCSTQGDYRVVTELEVYAVSIVGPVPTAVT NLLDLSRLNLLDLTRLDFHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDSIPPEIGELKSLTHLYLSFNNFKGEIPRELANLAELRYLYLQENRFSGRVP AELGTLQNLRHLDIGNNHLVGTIRELIHIEGCFPALRNLYLNNNYLTGGVPAQLANLTNLEILHLSYNKMTGFIPIQLAHIPKLTYLYLDHNQFTGRIPD SFYKHPFLKEMYIEGSSFKPGVNPIGIHKVFEVSDADFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	0	1
AT1G67410			Exostosin family protein (.1)		Lus10037016 [exp]	1.7	0.8361
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	5.7	0.7828
AT1G32120			unknown protein		Lus10011779 [exp]	7.3	0.7787
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	8.0	0.7969
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	8.5	0.8346
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	8.7	0.7781
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10031921 [exp]	9.2	0.8206
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	10.8	0.8098
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	11.5	0.7908
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	13.7	0.7928

Compare expression of checked genes

Lus10004662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.