Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20540 298 / 8e-95 MEF21 mitochondrial editing factor 21 (.1) AT5G08305 291 / 4e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 284 / 2e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 282 / 1e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 279 / 4e-87 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G66520 275 / 8e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 273 / 1e-83 SLO1 SLOW GROWTH 1 (.1) AT2G29760 269 / 9e-82 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 265 / 9e-82 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33350 260 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026650 [exp] 706 / 0 AT4G37380 251 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 293 / 1e-90 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 283 / 4e-88 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 279 / 1e-87 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 276 / 1e-87 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 281 / 4e-87 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 281 / 4e-87 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024971 [exp] 280 / 6e-87 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 278 / 2e-86 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106500 [exp] 315 / 2e-100 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 304 / 7e-97 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 309 / 1e-96 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 301 / 1e-94 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 300 / 1e-94 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G471600 [exp] 296 / 3e-94 AT2G20540 329 / 1e-106 mitochondrial editing factor 21 (.1) Potri.016G065500 [exp] 297 / 2e-93 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 295 / 4e-92 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G141200 [exp] 291 / 7e-92 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 293 / 1e-91 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004663 pacid=23176361 polypeptide=Lus10004663 locus=Lus10004663.g ID=Lus10004663.BGIv1.0 annot-version=v1.0 ATGTTCTTCGTGATCGAATTTTTCAGAACAACAACCAAGAGCTTGATGACAATCCTTCCTTCAACAAGATGCCTGAACCTTCTGAAGAAATGCAAGACCT TCAAACAACTCCATCAAGCTCAAGCTCAATCAATCACCTGCGGCCTTGGCCAAAACCCGTTTACTCTCAGCAGAATCCTAGCTTTCTACGCCGACACCAG AACCGCCGCCGCCGCCGCCGGCGACCACGCTTGGAACCTCTTCCAAACCATTCACCGGCCCACAATCTGCATCTGTAACACCACGATCAAATCCCTACTC CTCAACGACGATGACGAAAAACTCGCCAAAATTTTCAAAATCTACTCCACCATCTGGTGGCAAGAAATGTACCCGGATGATTACACGGTTCCGTACGTGT TGAAGGCTTGTTCGAGGATGGATTCTCGTTTGTATGGAGAAGTTGTTCATGGGTCGAGCGTGAAATTGGGGATCGAGTTGTTTACTGTTGTGGGGAACTC GTTGATTTCGATGTATTGTGGATTTGGGGATGTTGATGGTGCTGCAGGTAAGGTGTTTGACGAAATGCCTCACCGGTGTGTTGTGTCGTGGACGTTGATG GTTTCGTGGTTTGCGAAAGGAGGAGACGCTGAGAATGCGAGGATGGTTTTCGACGAGGCTCCAAGGAAGGATGCAGGGCTGTGGGGAGCTATGATTTCCG GGTATGTTCAGAATGGATGTTTCACGGAATGCTTGTATCTGTTCAGGGAGATGATGCAGGTCGAACGAATTCGTCCGGACGAGGGGATCTTTTCAAGCGT TTTGGCTGCTTGTGCTCAGTTGGGAGCATTGGATACTGGGATGTGGATTCATAGGCACTTGATTAGGAGGAATGGAGATCAAATGGAAATCGGTACACAT TTGAGTACCGCATTGGTCGATATGTACGTCAAATGCGGGAGCTTGGGTTTCGCGAAGAAAATTTTCGATGAAATTCACGAAAGGGACGTTGTGTGTTGGA ATGTGATGATTTCGGGGCTGGCAATGCACAGAGATGCTAAGAAAGCGCTTCGGCTTTTCTCCAAAATGGAGGAGTCTGGAATTCGACCGGATGACATAAC GTTTTTAACCCTTCTAGCGGCTTGCAGCCATTCGAACATGGCATCAGAAGGGTTATGGATGCTGGACCGGATGTGTAATGCTTACGAAATCGAGCCGAAG AGCGAACATTTGGGATGCATCGTTGATCTACTAAGTAGGGAGGGTCTTCTTCGAGAAGCTGCATCGATAATCGAAAAGATGCAGGCGAGAAGTTCTTCAG AAGAAGCAATAGCGTGGAGGGCATTGCTGAATGCTTGCTGCAACCAAGGAGACGCGAAACTGGCCGAAATAGCTGCCGAGAGAGTTTTCGAGCTGGAGAG CCACAGTGGGGCTTACGCACTGCTCGCGAATCTGTACGCTGCTGCAGGAAAGCACGATGAAGCGAAGAGGACGAGGATAATGATGAGGAATCGAGGGGTG GAAAAAGTGCCTGGTTGCAGCTCGATCAAGATCGGTGGGTTGGTTCATGAGTTTGTAGCTGGAATTGATTAA
AA sequence Show only first row Show all	>Lus10004663 pacid=23176361 polypeptide=Lus10004663 locus=Lus10004663.g ID=Lus10004663.BGIv1.0 annot-version=v1.0 MFFVIEFFRTTTKSLMTILPSTRCLNLLKKCKTFKQLHQAQAQSITCGLGQNPFTLSRILAFYADTRTAAAAAGDHAWNLFQTIHRPTICICNTTIKSLL LNDDDEKLAKIFKIYSTIWWQEMYPDDYTVPYVLKACSRMDSRLYGEVVHGSSVKLGIELFTVVGNSLISMYCGFGDVDGAAGKVFDEMPHRCVVSWTLM VSWFAKGGDAENARMVFDEAPRKDAGLWGAMISGYVQNGCFTECLYLFREMMQVERIRPDEGIFSSVLAACAQLGALDTGMWIHRHLIRRNGDQMEIGTH LSTALVDMYVKCGSLGFAKKIFDEIHERDVVCWNVMISGLAMHRDAKKALRLFSKMEESGIRPDDITFLTLLAACSHSNMASEGLWMLDRMCNAYEIEPK SEHLGCIVDLLSREGLLREAASIIEKMQARSSSEEAIAWRALLNACCNQGDAKLAEIAAERVFELESHSGAYALLANLYAAAGKHDEAKRTRIMMRNRGV EKVPGCSSIKIGGLVHEFVAGID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10004663 [exp]	0	1
AT2G21290			unknown protein		Lus10018053 [exp]	8.0	0.7382
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	9.0	0.7855
AT5G41685			Mitochondrial outer membrane t...		Lus10001641 [exp]	9.4	0.7184
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	11.6	0.7167
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	23.4	0.7082
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	24.7	0.6168
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	26.4	0.7246
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10035812 [exp]	29.5	0.6581
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	31.6	0.6645
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10026849 [exp]	33.9	0.6845

Compare expression of checked genes

Lus10004663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.