Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 504 / 4e-175 ATGUS2 glucuronidase 2 (.1) AT5G61250 503 / 1e-174 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 478 / 1e-164 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036963 [exp] 791 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 774 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10036962 [exp] 673 / 0 AT5G61250 501 / 8e-174 glucuronidase 1 (.1.2) Lus10037109 [exp] 669 / 0 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2) Lus10015737 [exp] 506 / 1e-175 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 504 / 6e-175 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 499 / 2e-173 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 500 / 3e-173 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 461 / 1e-157 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 696 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 503 / 1e-174 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 470 / 1e-161 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 456 / 1e-155 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 452 / 3e-154 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004664 pacid=23176374 polypeptide=Lus10004664 locus=Lus10004664.g ID=Lus10004664.BGIv1.0 annot-version=v1.0 ATGGCGGGTCTCAGAGCTCTTCTCCTCTGCTCAATCTTCCTAGCAGCAAGCTCTTCTTTTTCACTGTACATCGCCGCTACTGAAAGCGTCACCGTTTCGG TGAAGTCAGTGACCACCATTGCTGAGACTGACAGTGACTTCATCTGTGCAACCATCGACTGGTGGCCCAAGAACAAGTGTGACTATGGCCAGTGCCCCTG GGGAAACAACGGCGCCATCAATCTGGATTTGAAAAACAAGAACTTGCAAACGGCTGTCAAGGCTTTCGATCCGTTGAGGATCAGGGTCGGGGGTTCGATT GAGGATCTCGTCGTGTACAAAGTAGGTAGAGCAATCAAACACTTCCCTAAGTTCAAGAAGCAGAAGAATGGGTTGTTTGGGTTCAGTAGAGGCACCCTGA CCATGAAAAGATGGGATCACCTCAATGCGTTCTTCAACAAAACAAATACCAAGCTCATCTTCGGGCTGAATGAGCTCGTTGGCAAAAGAAACAAAGACCC ATCGACCCTTCTCTGGATTGGAGATTGGGACGCTCGGAATGCTCGGGATCTGATGAGCTACACCGCTCATGAGGGATACAAAATCGACTCGTACGAACTT GGAAATGAACTGACTGGTGAAGGAGTGTCAGCAACAATAGATCCTGAGCAGTATGCCATGGACACTAAACAGCTCAGGGAAGCCGTAAATGAATTGTACC CTGATCCCAGTTCGAGGCCGAAAGTCCTTGGTCCGGCTGGATTCTTCGACAAGGAATGGTTCAAGAAGTACCTCCAGGCTCTCGGTCCTAATGTCGTCGA TGGTGTCACCCACCACATCTACAATCTCGGCGCAGGTGTTGATCCTACCTTGATCAACAAGGTTCAGGATCCTTTCTTCCTAGACAAGATTGCTCAGACG TTCAAGGACGTTCGTGACATAGTGGACCGTTCAGGAACAGGAGCATCGGCCTGGGTTGGCGAATCGGGTGGTGCATACAACAGCGGTGGCAAAACTGTGT CCCACACGTTTGCGAATGGGTTCTGGTACTTAGATCAGCTCGGTATGACCTCCACTTTCAACCACAAGGTTTACTGCAGACAATCCCTTGTTGGTGGGAA CTATGGCTTCCTCAAGAGCAGGTCTTTCACCCCGAATCCAGACTACTACGGGGCGCTTTTGTGGCATCGGCTGATGGGGAACGGAGTGTTGGCAACCAGC CATGACGGGTCTCCGTACCTGAGGACATACACACATTGCTCTAAGAACACTACTGGAGTGACTATGCTTCTGATCAACATGTCGAACTCAACCAAATTCG ACATCTGGATCTCGAACGACTTGAACCTCTACGACTTGGGATCATCATCCGATTCGAGCTTTTTCCTTCTAACAGAAGACAGGGAAGAGTACCATCTGAC ACCAAAAGGCGGAAATATCCAGAGCGACGTGGTCCTCCTCAATGGAACTCCATTGAAGCTCACGAAATCTGGAGAAATCCCGAAACTGGCTCCTAAGCTC GTCCCAGCTTCGTCTCCGGTCACTGTAGCTCCTGATTCTTTCGTCTACGTCACCATCAAGGACTTCCAGGCTCCTGCCTGCTGA
AA sequence Show only first row Show all	>Lus10004664 pacid=23176374 polypeptide=Lus10004664 locus=Lus10004664.g ID=Lus10004664.BGIv1.0 annot-version=v1.0 MAGLRALLLCSIFLAASSSFSLYIAATESVTVSVKSVTTIAETDSDFICATIDWWPKNKCDYGQCPWGNNGAINLDLKNKNLQTAVKAFDPLRIRVGGSI EDLVVYKVGRAIKHFPKFKKQKNGLFGFSRGTLTMKRWDHLNAFFNKTNTKLIFGLNELVGKRNKDPSTLLWIGDWDARNARDLMSYTAHEGYKIDSYEL GNELTGEGVSATIDPEQYAMDTKQLREAVNELYPDPSSRPKVLGPAGFFDKEWFKKYLQALGPNVVDGVTHHIYNLGAGVDPTLINKVQDPFFLDKIAQT FKDVRDIVDRSGTGASAWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTSTFNHKVYCRQSLVGGNYGFLKSRSFTPNPDYYGALLWHRLMGNGVLATS HDGSPYLRTYTHCSKNTTGVTMLLINMSNSTKFDIWISNDLNLYDLGSSSDSSFFLLTEDREEYHLTPKGGNIQSDVVLLNGTPLKLTKSGEIPKLAPKL VPASSPVTVAPDSFVYVTIKDFQAPAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	0	1
AT4G02210			unknown protein		Lus10027531 [exp]	4.5	0.8063
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	4.7	0.8435
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	6.5	0.7973
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10015616 [exp]	7.6	0.7712
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	21.2	0.8099
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	21.9	0.7857
					Lus10007298 [exp]	24.3	0.8028
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030934 [exp]	28.0	0.7393
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003892 [exp]	28.8	0.7897
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	32.3	0.7905

Compare expression of checked genes

Lus10004664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.