Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13920 77 / 1e-15 Remorin family protein (.1) AT3G61260 62 / 5e-11 Remorin family protein (.1) AT1G69325 56 / 1e-09 Remorin family protein (.1) AT2G45820 54 / 2e-08 Remorin family protein (.1) AT5G23750 46 / 1e-05 Remorin family protein (.1.2) AT1G67590 44 / 9e-05 Remorin family protein (.1.2) AT3G48940 42 / 0.0001 Remorin family protein (.1) AT5G61280 42 / 0.0002 Remorin family protein (.1) AT2G02170 42 / 0.0005 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026649 [exp] 441 / 5e-156 AT1G13920 97 / 2e-22 Remorin family protein (.1) Lus10036964 [exp] 76 / 2e-15 AT1G13920 87 / 2e-19 Remorin family protein (.1) Lus10037111 [exp] 72 / 4e-14 AT1G13920 91 / 4e-21 Remorin family protein (.1) Lus10027460 [exp] 52 / 9e-08 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10017811 [exp] 51 / 2e-07 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10039215 [exp] 51 / 2e-07 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10014785 [exp] 50 / 4e-07 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 49 / 2e-06 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10008477 [exp] 47 / 1e-05 AT5G23750 154 / 5e-47 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160900 [exp] 115 / 2e-29 AT1G13920 99 / 1e-23 Remorin family protein (.1) Potri.008G093300 [exp] 107 / 2e-26 AT1G13920 80 / 1e-16 Remorin family protein (.1) Potri.015G143600 [exp] 48 / 3e-06 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.014G081300 [exp] 47 / 5e-06 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 45 / 2e-05 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.008G178300 [exp] 44 / 0.0001 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.008G144300 [exp] 44 / 0.0002 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.010G056800 [exp] 42 / 0.0003 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.003G124400 [exp] 40 / 0.0008 AT5G23750 129 / 6e-38 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10004665 pacid=23176391 polypeptide=Lus10004665 locus=Lus10004665.g ID=Lus10004665.BGIv1.0 annot-version=v1.0 ATGGAGTACTTGATCAAGCAAACAAAGGGTAAGACTTCTGGTCAACCAAAAGCAGCAGCAACAGAAAGAAGAGTCTCTGTACAGAAAACCGAGTCCTTCA AAGACAAAAGGAGGGTATGGTTCGGTAGAAGGTCTTCATTATCGAGGCAATTTGATCTAGATTCTGATACGATGGGGACCGAACAAGCCACTGCAGTGGC TGCTGCTGCATATGCAATTGCTGCTACAGAAAGTCCAAGCTTTCCGGAACGGATAAGGACATCATTCAAGGAAGAATCTCAACCTTCTCTTAGGAGGATA AGGAGCGAAAGGCAAGATGAATTAGGTTCGTTATCAGTAAGGCATTCGGAAGGAACAGATAGCGATGAGGAGTATTATGACATCGCACCTGCAGTGGCTG TTGCTCCAGTTTCGTCGATGAAAAGGAATCCAAGTTTCGTGGAAAAGCCTATTTCGTCGATTAAAAAGACACCAAGTTCTGTCGGAAAGCCTGTTCCAAC AATGGAGAAGTTGCCAGCTTCAGCGGAAATGCAGTTGAACGAGGCTATGGAGGATGGTGAGAGGAGCAAGGCCAAAAATGCAGAACTGCAGACTGAGGCG CCCTTCACCAAACCTGAAATTTCGATGGCAAAACCTGATCCAACGCTTAAGCCTGCAATCCCCCCGACCAGGGCTTCTGCAAGGACCGGGACTGGACAGA CAGCAGCAGATGCCTGGGAGAAAGTTGAGTTCGAGAAGCTGAAAGAGAAGTATGAACTGGAAAATGAACAGATCGATAAATGGGAAAATGAAAAGAAAGC AAGTGCCAAGCGGCAACTTGATAAAGCCGAGGGATCAGAGAGGACAAGGTTGAAAGCCTTGGAGAGATATCGAAGCGATGTGGACACCATCACTCAGATT GCAGAAGAAGCAAGAGCAAGTACAGCTAAGAAGCAGAGGAAAGATGAGCTGAAAGTGAAAGAAAAAGCAAATCTTTACAGAAGAACAGGAAAAGTTCCGA AAACATCATGCTCCTGCTTCTAA
AA sequence Show only first row Show all	>Lus10004665 pacid=23176391 polypeptide=Lus10004665 locus=Lus10004665.g ID=Lus10004665.BGIv1.0 annot-version=v1.0 MEYLIKQTKGKTSGQPKAAATERRVSVQKTESFKDKRRVWFGRRSSLSRQFDLDSDTMGTEQATAVAAAAYAIAATESPSFPERIRTSFKEESQPSLRRI RSERQDELGSLSVRHSEGTDSDEEYYDIAPAVAVAPVSSMKRNPSFVEKPISSIKKTPSSVGKPVPTMEKLPASAEMQLNEAMEDGERSKAKNAELQTEA PFTKPEISMAKPDPTLKPAIPPTRASARTGTGQTAADAWEKVEFEKLKEKYELENEQIDKWENEKKASAKRQLDKAEGSERTRLKALERYRSDVDTITQI AEEARASTAKKQRKDELKVKEKANLYRRTGKVPKTSCSCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	0	1
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	1.0	0.9901
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	1.7	0.9834
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	2.0	0.9843
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	2.6	0.9784
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	3.2	0.9791
					Lus10037173 [exp]	3.5	0.9695
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	3.5	0.9790
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	3.5	0.9807
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	5.2	0.9761
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	5.5	0.9741

Compare expression of checked genes

Lus10004665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.