Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69330 245 / 4e-81 RING/U-box superfamily protein (.1) AT3G29270 203 / 9e-65 RING/U-box superfamily protein (.1.2) AT1G74370 177 / 1e-54 RING/U-box superfamily protein (.1) AT1G21651 45 / 4e-05 zinc ion binding (.1) AT1G21650 45 / 4e-05 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026648 [exp] 513 / 0 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10015732 [exp] 221 / 3e-71 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10003473 [exp] 218 / 2e-70 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10005220 [exp] 211 / 2e-67 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10030699 [exp] 206 / 7e-66 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10028560 [exp] 45 / 6e-05 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161100 [exp] 259 / 7e-87 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.017G090000 [exp] 219 / 6e-71 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 215 / 3e-69 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 204 / 7e-65 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.019G066500 [exp] 47 / 1e-05 AT1G21651 716 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004666 pacid=23176398 polypeptide=Lus10004666 locus=Lus10004666.g ID=Lus10004666.BGIv1.0 annot-version=v1.0 ATGAATCTGTGGAGGTTTGCTTCAAATGCTATAGCTAGCATAGGGCTGAAGAGGAGCTCGAGCCCGAAAGAGACGATTCAAGACCATTCCTCAGAGTGTT CGGACGACGATGCGTGCTCGAATGCTAGCAAGGAGGAAGGATTGGAGTGTCCGATTTGTTGGGAGTCTTTCAACATTGTTGAGAATGTTCCTTATGTGTT GTGGTGTGGACATTCCCTTTGTCAGAACTGTGTTTTAGCTCTTCAGTGTACTGTGTGGCAGTTCCATGCTCAGCATTTCAAGGTTCCTTTCCTCATCTCG TGTCCTTGGTGCCACGTGGTGTCGCTACGGGTGTTGTATAATCGGAGCTTGAGGTTCCCTCGCAAGAACTACTTTCTTCTGTGGATGGTGGAGAGGTTGA ATGATGACCAGGCTGGGAAGGTTAACTCGTCGGCCTTGCCATCTGCTTTTGATGTTCAACCAGTTTGGCATTTGACAAATGAAGTTGGTAATGATCAAAC CACAACTCTTGAAAACGAAGCAAGGAATGAGCAGGATCAAGGGTTGGACTTTCAAGGGGATGGTCATGGAGGTAGAGGAAGCAATGCAGTGGGGAGACAG CATTTGCTATCATTGCACAAGTCGCTCGATCTTTTCATCCGCTTCACTTCCAAGTTCCCCTTGGCGATTGTATTGCTTCTGGTGGTGTTTTTCGCTGTTC CCATCAGTTCAGCCATATTGATCCTCTACTTTATAGTTACTGTTGTTTTCGCAATACCATCTTGCTTGGTTTTGTATTTTGCATACCCTACCTTGGCTAG GCTTGTTGCAGAAATCATCTCTTGA
AA sequence Show only first row Show all	>Lus10004666 pacid=23176398 polypeptide=Lus10004666 locus=Lus10004666.g ID=Lus10004666.BGIv1.0 annot-version=v1.0 MNLWRFASNAIASIGLKRSSSPKETIQDHSSECSDDDACSNASKEEGLECPICWESFNIVENVPYVLWCGHSLCQNCVLALQCTVWQFHAQHFKVPFLIS CPWCHVVSLRVLYNRSLRFPRKNYFLLWMVERLNDDQAGKVNSSALPSAFDVQPVWHLTNEVGNDQTTTLENEARNEQDQGLDFQGDGHGGRGSNAVGRQ HLLSLHKSLDLFIRFTSKFPLAIVLLLVVFFAVPISSAILILYFIVTVVFAIPSCLVLYFAYPTLARLVAEIIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	2.0	0.8409
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10015077 [exp]	3.5	0.8393
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	6.0	0.8302
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	6.5	0.8298
AT1G69430			unknown protein		Lus10036796 [exp]	8.6	0.8407
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	12.4	0.8114
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	16.4	0.8309
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	16.9	0.8020
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	17.0	0.8302
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	17.2	0.8257

Compare expression of checked genes

Lus10004666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.