Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 146 / 2e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 124 / 4e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 120 / 4e-31 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 116 / 3e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 115 / 3e-29 SGNH hydrolase-type esterase superfamily protein (.1) AT1G33811 111 / 1e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 110 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 108 / 1e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 106 / 7e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 105 / 1e-25 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026647 [exp] 454 / 1e-160 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 243 / 4e-79 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 233 / 1e-75 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 233 / 1e-75 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026646 [exp] 206 / 4e-63 AT1G29670 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 197 / 1e-60 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 181 / 1e-53 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 177 / 3e-52 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 175 / 3e-51 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 159 / 3e-45 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 137 / 2e-37 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 127 / 5e-33 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 118 / 3e-30 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024700 [exp] 115 / 5e-29 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 112 / 5e-28 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 112 / 1e-27 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G086700 [exp] 110 / 4e-27 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102400 [exp] 110 / 5e-27 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 109 / 9e-27 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004668 pacid=23176381 polypeptide=Lus10004668 locus=Lus10004668.g ID=Lus10004668.BGIv1.0 annot-version=v1.0 ATGGTGGTTATGGATCAGCTGCCTCTTCCGTGCTCGTCGCAAGGCAATCTGAGCGGGCCATGTGCGTTCTTCTTGGGTAGCTTCCAGTTTGATGTTGGGA CGAACAACTACTTGAATATGAGCACCGCAAGGGCCGACTTCCCTCCTAATGGGATCGATTTTCCGACCGGCCCTACCGGTAGGTTTACCAATGGCAGGAA TCAGGCCGACTATATCGCTATGAAGATGGGTTTGAACTTTAGTCCGCCGGCCTACCTCTCATTCGTCGCCGGCACCTGGGGAACCTACGCATCAGACCTC CAGAGTGTACTAAATAACGGGGGACTCAACTTTGCTTCCGGAGGCGGTGGAATTTCCGACTCTGGCCGCAGATCTTATGGTCAGGTGGTGCCGATAGGAA CGCAGGTCAGCCAACTAGAGGGTGTGGCAAGAGACCTGCAAACTGTGTTCAACTCAACTGCGGCCGCTGCTTACCTGACCCGGTGTGTATATTATATCAA CGCCGGAAGCGGAAGCATCCTAAACCAACTCGATAGTCTCATTTTCACCGACCCATCGTACATCGAAAGAGCTGCAAGTGAATACGTTACTTATGTACAA GCTCTATATGCAATTGGAGCACGGAAGTTCGGGGTTGTAGGACCTGTACAAACCGGGTGCACTCCAGGCGGTCGAGCCACGAGCCCTACTAGGGCCTGCA ACGCAAGAGCAAATTCAATTGCAGCGGCTCTCCCTTCTCGCCTGGCATTAGCTCTGAGCATGCTTCAGGATACGAATCCCGATATCGTTTATTCCGTAGC GAATACTTATAAAATAAACGCCGACATCACCAGCAGTCCAACGCTATACGGTATAAGGAATGTCACAGCTGCGTGTTGCGGGGACCAAACGACGTTGTGC CTCGCTAATTCTACCGTGTGTGGGGACCGCGACGGGTATTTGTATTGGAGTCAGTATCAACTAACCCAAGCGGGTTCGAGATTGGTCGTCGAAGCTTTTT TCAGCGATAATTCAAGATATACCGACCCTATAAGCTTCACAGAACTGATTAACGCACCGAACCCAACTGAATGA
AA sequence Show only first row Show all	>Lus10004668 pacid=23176381 polypeptide=Lus10004668 locus=Lus10004668.g ID=Lus10004668.BGIv1.0 annot-version=v1.0 MVVMDQLPLPCSSQGNLSGPCAFFLGSFQFDVGTNNYLNMSTARADFPPNGIDFPTGPTGRFTNGRNQADYIAMKMGLNFSPPAYLSFVAGTWGTYASDL QSVLNNGGLNFASGGGGISDSGRRSYGQVVPIGTQVSQLEGVARDLQTVFNSTAAAAYLTRCVYYINAGSGSILNQLDSLIFTDPSYIERAASEYVTYVQ ALYAIGARKFGVVGPVQTGCTPGGRATSPTRACNARANSIAAALPSRLALALSMLQDTNPDIVYSVANTYKINADITSSPTLYGIRNVTAACCGDQTTLC LANSTVCGDRDGYLYWSQYQLTQAGSRLVVEAFFSDNSRYTDPISFTELINAPNPTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10004668 [exp]	0	1

Compare expression of checked genes

Lus10004668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.