Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05840 554 / 0 Protein of unknown function (DUF620) (.1) AT3G55720 431 / 6e-149 Protein of unknown function (DUF620) (.1) AT5G66740 412 / 2e-142 Protein of unknown function (DUF620) (.1) AT1G75160 397 / 4e-136 Protein of unknown function (DUF620) (.1) AT3G19540 360 / 2e-120 Protein of unknown function (DUF620) (.1) AT1G49840 356 / 5e-119 Protein of unknown function (DUF620) (.1) AT1G27690 352 / 3e-118 Protein of unknown function (DUF620) (.1) AT1G79420 304 / 2e-99 Protein of unknown function (DUF620) (.1) AT5G06610 268 / 2e-86 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040241 [exp] 869 / 0 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 402 / 1e-138 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 408 / 2e-134 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 384 / 2e-131 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1) Lus10007157 [exp] 377 / 7e-129 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 365 / 1e-122 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 359 / 2e-120 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 318 / 2e-104 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 266 / 3e-87 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195200 [exp] 649 / 0 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 635 / 0 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 454 / 5e-159 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 441 / 4e-154 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.007G027800 [exp] 407 / 9e-141 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 366 / 3e-123 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 364 / 2e-122 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 352 / 2e-117 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 328 / 2e-109 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 327 / 3e-109 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10004669 pacid=23174276 polypeptide=Lus10004669 locus=Lus10004669.g ID=Lus10004669.BGIv1.0 annot-version=v1.0 ATGAGGAAACTCTGTCCAAACTACGATCGGGAAGACGGGTTGGATACGGTTTTGGAGGTTCCGATCCCGGAAGAAGTCTTCACATCTTCGGCCAGTAGTC GGAGCGGCGGCGCCGGGAATCTTTCTTGGCAGAGCATGAAGGCTTGGATGACTAGGACGAATGGTTATCATGAGCAGAAGGCGGCTCACTCGACGGCGGA GAAGAGCATGGAGATTCAGATCTTGTTGGGTGTTGCAGGCGCCCCTTTGATTCCTTTCCCTATCAATGGCGACAGTCAGCTCATTACCCGGAATTTCAAG GACCAGCCGATCGAGGCGTCAATGGCGAAATACATAGTGCAGCAATACGTGGCGGCGGTGGGAGGAGAAACGGCTCTGAATTCTGTGGAGAGCATGTATG CGATGGGGAAGGTGAAAATGGCTGCTTCCGAATTCTCTACCGGGGAAGCGAACAACAAACCGATTAAGGTGAAGAATATGAAGAGTGGGAGTGGAGAGAT GGGTGGGTTTGTTCTGTGGCAGAAAAGGCCTGAGCTTTGGTGCTTGGAGCTTGTAGTTTCTGGCTGCAAGATCAGTGCAGGTAGTGATGGTAAAGTTGCT TGGAGGCAAACTCCTTGGCACCATTCTCATGCTTCCAGAGGTCCCCCCCGACCCCTTCGGCGTTTCCTTCAGGGTCTTGATCCGAAGTCAACAGCCAACC TATTCTCCAACTCAACTTGCACAGGCGAAAAGACGATAAACGACGAGGACTGCTTCGTACTAAAGCTCGAAGCGGATCCTGCATCATTAAGAGCAAGAAG CACAAGCAACGTAGAGATCATCAGGCATACAGTTTGGGGATATTTCAGCCAAAGAACAGGATTATTAATCCAGTTAGAAGACTCCCACCTGCTCAGAATC AAAGCTCCCGGAAGCAACGAGAGCGTGTTCTGGGAGACGACGATGGAGTCGACGATTCAGGACTATAGAACCATAGACGGGATGATCAACATTGCTCATG CGGGAAGGACGAAGGTTTCTTTAATCAGGTTTGGCGAGAGCAGTGAGAGCCACTCGTCCCGGACGCATATGGAGGAAGTGTGGGAGATCGAGGAGGTCGA TTTCAACATCAAAGGGCTGTCGATGGACTGTTTCCTTCCGCCTAGTGATCTGAAGAAGGAAGAAGATGCTTATGATGGAGGAGTGATGGATGCTAACAAT AGTAATGTGAAGCTTCAGTCGAAGATCCTCCGATCTGGTTCTAACAAGGCTATTAGTGCTTCTAAGGTAGTTGCTATTGATGTTGAGGATCCGGATAATC TTGAAGAGAATAAGGAACGTGAAGATTTGTAA
AA sequence Show only first row Show all	>Lus10004669 pacid=23174276 polypeptide=Lus10004669 locus=Lus10004669.g ID=Lus10004669.BGIv1.0 annot-version=v1.0 MRKLCPNYDREDGLDTVLEVPIPEEVFTSSASSRSGGAGNLSWQSMKAWMTRTNGYHEQKAAHSTAEKSMEIQILLGVAGAPLIPFPINGDSQLITRNFK DQPIEASMAKYIVQQYVAAVGGETALNSVESMYAMGKVKMAASEFSTGEANNKPIKVKNMKSGSGEMGGFVLWQKRPELWCLELVVSGCKISAGSDGKVA WRQTPWHHSHASRGPPRPLRRFLQGLDPKSTANLFSNSTCTGEKTINDEDCFVLKLEADPASLRARSTSNVEIIRHTVWGYFSQRTGLLIQLEDSHLLRI KAPGSNESVFWETTMESTIQDYRTIDGMINIAHAGRTKVSLIRFGESSESHSSRTHMEEVWEIEEVDFNIKGLSMDCFLPPSDLKKEEDAYDGGVMDANN SNVKLQSKILRSGSNKAISASKVVAIDVEDPDNLEENKEREDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	0	1
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	1.0	0.8364
					Lus10002975 [exp]	2.8	0.7846
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	8.7	0.7600
AT3G52710			unknown protein		Lus10022708 [exp]	11.2	0.7496
AT2G36220			unknown protein		Lus10022709 [exp]	15.7	0.7405
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	16.4	0.7498
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	16.5	0.7219
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	23.5	0.6280
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	26.5	0.6903
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	29.8	0.6429

Compare expression of checked genes

Lus10004669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.