Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22340 293 / 5e-94 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22400 291 / 4e-93 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 290 / 1e-92 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 286 / 2e-91 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 283 / 3e-90 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22370 281 / 3e-89 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G11340 219 / 8e-66 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 207 / 4e-61 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 201 / 5e-59 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G05880 199 / 4e-58 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014831 [exp] 490 / 7e-171 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10009876 [exp] 485 / 9e-169 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10040242 [exp] 423 / 2e-146 AT1G78270 117 / 3e-29 UDP-glucosyl transferase 85A4 (.1) Lus10017201 [exp] 355 / 4e-118 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 288 / 5e-92 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 281 / 4e-89 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 276 / 2e-87 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 276 / 7e-87 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 274 / 2e-86 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062400 [exp] 520 / 0 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 389 / 5e-131 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.016G105300 [exp] 388 / 8e-131 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 298 / 8e-96 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023600 [exp] 296 / 3e-95 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.002G098300 [exp] 294 / 6e-94 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023700 [exp] 281 / 2e-89 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.016G022000 [exp] 281 / 2e-89 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 280 / 4e-89 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022100 [exp] 280 / 5e-89 AT1G22380 489 / 2e-170 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10004670 pacid=23174248 polypeptide=Lus10004670 locus=Lus10004670.g ID=Lus10004670.BGIv1.0 annot-version=v1.0 ATGGAACTTGACAAAGCACCAATCTTTCCTCACGTTCTGATCTTCCCGTTTCCAGTACAGGGCCACGTCAACTCCATGCTCAAGCTAGCCGAGCTCTTGT CCCTCGCCGCAGGCGGCGGCATCCGAATCACCTTCCTCAACTCCGACTGCACCCACAACCGCCTGCTCCAGTTCTCCGACGCCGAATCCCGGTTCTCGGT GTACCCTGGATTCCAATTCAAGACCATCGACGACCACCGCATCCCGATGGAAAAGCTCACCAAAGGCGACAAGGTCTTGGATTTGGTGGGAGCAATGGAA TCTGAAATGAAGCCGGATTTTCGCGATATGCTGTCTCGGATGGATCCGCCGGTGACCTGTGTGATCGGAGATGGACTTTTGGGGTTCATCCGTGAGGTTT CAATGGAATTGGGAATCCCAGTCATCCGATTTCGCACAATTTCACCTTGCTGCTTTTGGGTCAACTACTGCCTCCCGGATTTAATCGAAGCCGGCGAACT CCCCATCCAAGATATGGACAGGAAGATCAGCAAGGTGCCTGGGATGGAATCCTTTCTCAGGAGTCGAGATCTACCCGGAATGTGTCGGGTGTCGGGTTTG GACGACCCGACTTTAGTCATGCTCATCAATGCAACAAGAGAATCTCCTCCTTTGTCTCCGCTAATTCTCAACACATTCGAAGATTTGGACTCTTCAGTTC TGTCTCAAATCCGCCGCCATTTCCCCCAAACATACGCCATTGGGCCACTCCACCAGCATCTGGAATCAAGGCTACGAACGATGTCTTTTGGGTCCCAAAA CAACATCAACACGCAATCTTCATCCAGTAACAGCTTATGGAAAGAGGAAGCAAGCTGCTTGAAATGGCTGGATCAGCAGCCAGAGGGATCCGTGCTGTAC GTCAACTTCGGAAGCATTACCGTGATGACAGCAGATCGAATCGTTGAGTTCTGGGAAGGGTTGTCGAGTAGTAAGCATCGGTTTCTGTGGGTTATGAGGC CCGGTCTGATTCCTGACAAGGAACTTGAAAAAATTCCTCAAGAGATTTTGAATCAGAAGGAAGGGTTTTACAAAGTGGTGGTGGGATGGGCGCCTCAGGA AGAGGTTTTGAACCATGCCGCGGTCGGAGGGTTCCTGACTCACAGCGGATGGAACTCGACTTTGGAGAGCGTTGCGGCTGGTGTTCCGATGATCTGCTGG CCGTTCTTCGCGGACCAGCTGGTGAACAGCAGGGTTGTGAGCGAGGTTTATAATTTGGGGTTGGATATGAAGGATGTTTGTGATAGAAAGGTTGTGGAGA GGATGGTGAATGATCTGATGGATGAGAGGAAAGATGAGTTTCAAAGTTTGGCGGCCAAAATGGCTGCGTTGGCGAAGGGGAGCGTGTCGGAAGGAGGATC GTCTTGCCGGAATCTGGAGGTATTGATTCAGGATATTAGGCTGATGAGTGTTAAAGGCACATGA
AA sequence Show only first row Show all	>Lus10004670 pacid=23174248 polypeptide=Lus10004670 locus=Lus10004670.g ID=Lus10004670.BGIv1.0 annot-version=v1.0 MELDKAPIFPHVLIFPFPVQGHVNSMLKLAELLSLAAGGGIRITFLNSDCTHNRLLQFSDAESRFSVYPGFQFKTIDDHRIPMEKLTKGDKVLDLVGAME SEMKPDFRDMLSRMDPPVTCVIGDGLLGFIREVSMELGIPVIRFRTISPCCFWVNYCLPDLIEAGELPIQDMDRKISKVPGMESFLRSRDLPGMCRVSGL DDPTLVMLINATRESPPLSPLILNTFEDLDSSVLSQIRRHFPQTYAIGPLHQHLESRLRTMSFGSQNNINTQSSSSNSLWKEEASCLKWLDQQPEGSVLY VNFGSITVMTADRIVEFWEGLSSSKHRFLWVMRPGLIPDKELEKIPQEILNQKEGFYKVVVGWAPQEEVLNHAAVGGFLTHSGWNSTLESVAAGVPMICW PFFADQLVNSRVVSEVYNLGLDMKDVCDRKVVERMVNDLMDERKDEFQSLAAKMAALAKGSVSEGGSSCRNLEVLIQDIRLMSVKGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	1.4	0.9684
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	1.7	0.9630
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	2.0	0.9626
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	2.4	0.9660
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	2.8	0.9524
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	3.0	0.9497
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	4.2	0.9535
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	4.6	0.9532
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	4.7	0.9488
AT1G52140			unknown protein		Lus10006040 [exp]	4.9	0.9484

Compare expression of checked genes

Lus10004670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.