Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 408 / 1e-139 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 407 / 5e-139 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 388 / 9e-132 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05880 381 / 5e-129 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 379 / 4e-128 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 368 / 7e-124 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05890 357 / 8e-120 UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 351 / 3e-117 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 335 / 6e-111 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46670 324 / 8e-107 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037268 [exp] 488 / 1e-170 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 461 / 1e-159 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 447 / 6e-155 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016460 [exp] 357 / 1e-119 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10040725 [exp] 357 / 1e-119 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10040244 [exp] 342 / 5e-117 AT3G55700 169 / 3e-50 UDP-Glycosyltransferase superfamily protein (.1) Lus10016461 [exp] 335 / 4e-111 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 332 / 1e-109 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10024584 [exp] 258 / 1e-80 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195300 [exp] 497 / 1e-174 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 496 / 7e-174 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 488 / 4e-171 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 369 / 2e-124 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 327 / 1e-107 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.009G039100 [exp] 285 / 2e-87 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.001G313000 [exp] 257 / 1e-80 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 248 / 8e-77 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 246 / 4e-76 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 241 / 2e-74 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10004671 pacid=23174292 polypeptide=Lus10004671 locus=Lus10004671.g ID=Lus10004671.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCCCTAAGAGAATCACACGTTAAGCAAAAGAAGAACCGCAGGCTATTACTCTTCCCTACTCCACTACAAGGCCACATCAACCCTATGATCC AGCTCGCCCACATTTTCTACTCCAAAGGCTTCTCCATAACTATTCTCCACAACAATTTCAACTCTCCGGATCCTTCCAAGTACCCATTTTTCAGCTTCCA TCTAATCCCTGAAGGCTTATCTGAAAAGGAAGCTTCTGAAATGGATGCAACCCCTCTCATTGCACTCCTCAACGAGATGTTAACCGACATATTACAAGAC CACTTGGTCAAGTTGTTATTGGAGGAGGAGGAAGAGCCTATAGCTTCGTTAATCGTCGATGCTAGCTGGCATTTCACTCAGGAAGTTGCAGATGATCTTA AGCTTTCTAGGTTCGTGTTGCGGACTAGTAATGCTTGTTCCTTCCTTGTTTACAATGCTTTCCCACTTCTACTGGAGAAAGGCTACATGCCTGTTACAGA TTCGCGACTCGAAGAGCTTGTTCCGGAGCTTCCACCATTGAGAGTGAAAGACTTACCAGATATAAAGATGAAAAAGCCAGATGATTTCTACAATCTGGTT GCTGGAATGATAAGGACAGTCAATGCCTCTTCAGGTCTCATCTGGAATTCATGTGAAGACTTGGAGCAAGCTGCTTTAATCAAGTGTCGCCAAGTATTCA AGTCCCCTATGTTCAACATAGGCCCCTTCCATAACTACTTCCCAGCAGCTTTGGAAGAAGATCAGAAGAATTCCATATCCTGGCTAGACACACAAATGCC AAACTCAGTAATCTATGTCAGCTTTGGCACCATTGCAGTTGCAACCGAGACCGAGTTCTTGCACATCGCGTGGGGTCTCGCGAACAGCAAGCAGCGCTTT CTGTGGGTTGTTCGCCCTGGATCGGTTCGTGGATCGGAATGGCTACAGCTCTTGCCTGACAAGTTTCATCAGGCGGTGAATGGAAGGGGTAAGATCGTAA AATGGGCCCCGCAACGGCATGTGCTTGCACATCCTGCTGTTGGTGGGTTCTGGACACACTGCGGGTGGAACTCGACGTTTGAGAGCATCTGTGAAGGGGT TCCCATGATATGCCACCCTTCATTTGGCGACCAAAAGGTGAATGCCAGGTATGTGAGTGATGTTTGGAGAGTTGGGATTCACTTGGAAGGTAATAGAGAT AGAGTGGGGATAGAGAGAGCAATCAGAATGCTGATGGTTGATGCTGAAGGGCAAGAAATCAGACAAAGAAGTATTGCTTTGAAGGACAAGATTGATGATT CTCTTAAGCAAGGAGGGTCTTCTTACCGTTCTTTGGATAGCCTCGTCAGCAGTATTCTGTCAGCATGCTAG
AA sequence Show only first row Show all	>Lus10004671 pacid=23174292 polypeptide=Lus10004671 locus=Lus10004671.g ID=Lus10004671.BGIv1.0 annot-version=v1.0 MEEALRESHVKQKKNRRLLLFPTPLQGHINPMIQLAHIFYSKGFSITILHNNFNSPDPSKYPFFSFHLIPEGLSEKEASEMDATPLIALLNEMLTDILQD HLVKLLLEEEEEPIASLIVDASWHFTQEVADDLKLSRFVLRTSNACSFLVYNAFPLLLEKGYMPVTDSRLEELVPELPPLRVKDLPDIKMKKPDDFYNLV AGMIRTVNASSGLIWNSCEDLEQAALIKCRQVFKSPMFNIGPFHNYFPAALEEDQKNSISWLDTQMPNSVIYVSFGTIAVATETEFLHIAWGLANSKQRF LWVVRPGSVRGSEWLQLLPDKFHQAVNGRGKIVKWAPQRHVLAHPAVGGFWTHCGWNSTFESICEGVPMICHPSFGDQKVNARYVSDVWRVGIHLEGNRD RVGIERAIRMLMVDAEGQEIRQRSIALKDKIDDSLKQGGSSYRSLDSLVSSILSAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	0	1
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	1.0	0.9103
AT4G02720			unknown protein		Lus10022052 [exp]	2.8	0.8822
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	4.6	0.8723
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	4.9	0.8663
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10028539 [exp]	5.4	0.8180
AT4G02720			unknown protein		Lus10042601 [exp]	5.5	0.8644
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	9.4	0.8473
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	10.1	0.8270
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	13.0	0.8532
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	13.4	0.8607

Compare expression of checked genes

Lus10004671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.