Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 401 / 3e-136 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 387 / 6e-131 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT3G55700 374 / 1e-125 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 369 / 9e-124 UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 363 / 2e-121 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 363 / 3e-121 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 362 / 1e-120 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05890 344 / 6e-114 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 324 / 4e-106 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 322 / 1e-105 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037268 [exp] 626 / 0 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 483 / 2e-168 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 451 / 1e-155 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 348 / 2e-115 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 342 / 3e-113 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 342 / 4e-113 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 310 / 2e-100 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10013925 [exp] 254 / 8e-79 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 250 / 8e-77 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195600 [exp] 490 / 6e-171 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 466 / 1e-161 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 463 / 2e-160 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 357 / 6e-119 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 309 / 6e-100 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.001G313000 [exp] 268 / 4e-84 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.009G039100 [exp] 275 / 4e-83 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.007G095000 [exp] 264 / 1e-82 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.002G098400 [exp] 257 / 6e-80 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 254 / 7e-79 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10004672 pacid=23174279 polypeptide=Lus10004672 locus=Lus10004672.g ID=Lus10004672.BGIv1.0 annot-version=v1.0 ATGAAGAACCATACCTTGAAAGAGTTCCATATTCGGCAAAAGAAAGGCATCCGGCTCTTGCTATTTCCAATACCATTCCAAGGCCACATAAACCCCATGC TTCAACTAGCAAACATCCTATACTCCAAAGGCTTCTCCATCATCATAATTCACACCAGCTTCAACTCTCTAAACCCATCAAATTACCCTGAATTCGCCTT CCACTCCATCCACCATGGCTTATCGGAAGAGGAAGTCAATGAAGCCTCTTCTAGAGTTGTAGATGTGGCGGCTCTTCTCAACTCCATCAATATCACTTGC GTTGAATCTTTCCAGGAAGCCTTAGGCAAGCTGTTATCAGAAAACTTAGAGGAGGAGGAGCCTGTTGCTTGCCTCATTACTGATGCCCTTTGGCACTTCA CTCAGGCGGTTACTGATAGTCTCCATCTCCCCAGGATTATGCTTAGAACAAGCAACGCTTGTTCTTTACTTGTTCTTGAACACTTACAGTTATTCTGCCG AAAAGGTTACATTCCCCTTCAAGGTAATGCTACAAGTTCCTTCTTCTCTGAGTACCTTTACTCAGATAGAAGAGCAATTTCAGGTCTCAAACGATTCAAC AATTTTGCTGCTTTGTGTTTTTCAGCTGCCAGGGTAGAAGAACGCATCCCAGAATTTCCACATCTGAAATTTAAGGACCTCCCACAAGTGAAGACGCAGA ACCAAGAAGACATGGTGCATCTACTAGTAGCTAGCATGATCAGGACAATTAAAGGCTCTTCAGGACTCATCTGGAATACCTGTCAGGACTTGGAACGGTC TGACTTGGTAAAAAGCTCTCAACTTTTGAATATTCCCATTTTCCCTTTGGGGCCTTTATACAAACACTTTCCGTGCATCTCCAAAAGCAGCCTGCTAGGA CAGGACCAAACCTCCATTTCCTGGCTAAACACTCAAGCACCAAAATCAGTTCTCTACGTCAGCTTCGGAAGCATCGCGACGGTAACCAAGGCCGAGTTCC TAGAGATCGCTTGGGGACTCGCCAACAGCCAGCAACCATTTCTATGGGTGGTTCGGCCGAAATCAGTCGAGAATTCAGAGTGGATCGAGTTTTTACCAGA TGGGTTTGATGGCGGGAAATTAGGGTACATCGTGAAATGGGCTCCACAGGAAGAGGTGCTAGCGCATCCGGCGACAGGAGGGTTCTGGACGCACTGCGGA TGGAACTCGATATTGGAGAGTATATGCCAAGGTGTACCGATGATCTGTGCGCCTAGCTTCGGAGATCAATTGGCGAATGCGAGGTACGTGAGCGATGTTT GGAGGATCGGGATTCACCTGGAAGGGGAAGTGAAAAGAGGTAAGATTGAGAGAGCTGTAAAGGAATTGATGGCGGAGGAAGAGGGTGCGAGAATGAGAGA AAGAGTTGGGTATATGAAAGCGAAGATGGAATGCTGTATCGAGCCAGGAGGATCTTCGTATAAAGCTCTGAATAGCTTGGTTGATCATATCCTGTCACTT TGA
AA sequence Show only first row Show all	>Lus10004672 pacid=23174279 polypeptide=Lus10004672 locus=Lus10004672.g ID=Lus10004672.BGIv1.0 annot-version=v1.0 MKNHTLKEFHIRQKKGIRLLLFPIPFQGHINPMLQLANILYSKGFSIIIIHTSFNSLNPSNYPEFAFHSIHHGLSEEEVNEASSRVVDVAALLNSINITC VESFQEALGKLLSENLEEEEPVACLITDALWHFTQAVTDSLHLPRIMLRTSNACSLLVLEHLQLFCRKGYIPLQGNATSSFFSEYLYSDRRAISGLKRFN NFAALCFSAARVEERIPEFPHLKFKDLPQVKTQNQEDMVHLLVASMIRTIKGSSGLIWNTCQDLERSDLVKSSQLLNIPIFPLGPLYKHFPCISKSSLLG QDQTSISWLNTQAPKSVLYVSFGSIATVTKAEFLEIAWGLANSQQPFLWVVRPKSVENSEWIEFLPDGFDGGKLGYIVKWAPQEEVLAHPATGGFWTHCG WNSILESICQGVPMICAPSFGDQLANARYVSDVWRIGIHLEGEVKRGKIERAVKELMAEEEGARMRERVGYMKAKMECCIEPGGSSYKALNSLVDHILSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	0	1
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	2.2	0.9676
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	2.4	0.9418
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	3.7	0.9537
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	5.7	0.9441
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	9.7	0.9424
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	10.2	0.9394
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	10.9	0.8995
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	12.5	0.9481
					Lus10033259 [exp]	16.2	0.9140
AT5G02640			unknown protein		Lus10038485 [exp]	17.3	0.8990

Compare expression of checked genes

Lus10004672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.