Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 235 / 1e-76 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 222 / 4e-71 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05860 216 / 5e-69 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05880 214 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 211 / 5e-67 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 206 / 8e-65 UDP-Glycosyltransferase superfamily protein (.1) AT5G05890 205 / 9e-65 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 202 / 1e-63 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 198 / 5e-62 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 191 / 2e-59 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 342 / 3e-118 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 225 / 2e-72 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 215 / 3e-68 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 214 / 1e-67 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 189 / 1e-58 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 182 / 5e-56 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 181 / 3e-55 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10035681 [exp] 162 / 1e-51 AT3G11340 191 / 5e-60 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 169 / 1e-50 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195500 [exp] 249 / 1e-81 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 248 / 3e-81 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 241 / 8e-79 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 219 / 2e-70 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.009G039100 [exp] 216 / 6e-66 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.006G039300 [exp] 191 / 5e-59 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.002G098400 [exp] 154 / 8e-45 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 150 / 1e-43 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023700 [exp] 150 / 2e-43 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.016G105400 [exp] 150 / 2e-43 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10004673 pacid=23174287 polypeptide=Lus10004673 locus=Lus10004673.g ID=Lus10004673.BGIv1.0 annot-version=v1.0 ATGATCAGCCAGAGTGAGTTCCAGGAGATAGCTTCGGGGATAGTTAGTAGCAACCAGCCCTTCTTGTGGGTGGTTCGACCAGGATTGGTTTCAGGGTCGG ATTGGCTCAAGGGGTTTCCTGATGGGTTTATGGAGATTGTGAAGGGAAGAGGGCGGATTGTGAAATGGGCTCCGCAACAAGAGGTGCTGGCACATCCGGC CACAGGTGGGTTCTGGACACACAATGGTTGGAATTCCACACTGGAGAGTATATGTGAAGGTGTTCCTATGATTAGTCATCCCATAGCAGGGGATCAGATG GTAAATGCCAGGTATGTGAGTGACGTTTGGAGAATTGGGTTGCATTTGGAGAAAAAGGTGGAGAGAAAGGAGATTGAAAATGTTATCAGAAGATTAATGG TAGAACCAGAAGGTGAAGAACTGACGAAGAAGGTCAAGTATCTGAAGGAAAAGGCTGAGTTTTGCATAAAACAAGGTGGCTCTTCTAGTCTGTCACTGGA AAAGTTAACTAGTTACATTCTTTCATTTTAG
AA sequence Show only first row Show all	>Lus10004673 pacid=23174287 polypeptide=Lus10004673 locus=Lus10004673.g ID=Lus10004673.BGIv1.0 annot-version=v1.0 MISQSEFQEIASGIVSSNQPFLWVVRPGLVSGSDWLKGFPDGFMEIVKGRGRIVKWAPQQEVLAHPATGGFWTHNGWNSTLESICEGVPMISHPIAGDQM VNARYVSDVWRIGLHLEKKVERKEIENVIRRLMVEPEGEELTKKVKYLKEKAEFCIKQGGSSSLSLEKLTSYILSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	0	1
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	1.0	0.9825
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10014412 [exp]	2.0	0.9486
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	7.7	0.8779
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	9.5	0.9376
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	11.0	0.9165
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	13.4	0.9245
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	14.1	0.9325
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	14.1	0.9080
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	14.8	0.8582
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	17.5	0.9229

Compare expression of checked genes

Lus10004673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.