Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55700 110 / 3e-29 UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 92 / 2e-22 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 90 / 6e-22 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 77 / 2e-17 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05900 68 / 3e-14 UDP-Glycosyltransferase superfamily protein (.1) AT5G05890 61 / 8e-12 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 59 / 6e-11 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 57 / 2e-10 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 56 / 6e-10 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 54 / 2e-09 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 253 / 7e-84 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 118 / 3e-32 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 109 / 5e-29 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 84 / 1e-19 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040244 [exp] 80 / 4e-19 AT3G55700 169 / 3e-50 UDP-Glycosyltransferase superfamily protein (.1) Lus10016460 [exp] 64 / 1e-12 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016459 [exp] 63 / 2e-12 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10024584 [exp] 62 / 5e-12 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 61 / 1e-11 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195500 [exp] 134 / 5e-38 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 129 / 2e-36 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 120 / 4e-33 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052232 [exp] 66 / 2e-13 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 65 / 3e-13 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G039300 [exp] 65 / 5e-13 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.017G052100 [exp] 64 / 6e-13 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 62 / 5e-12 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.005G073766 [exp] 58 / 1e-10 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 58 / 1e-10 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004674 pacid=23174261 polypeptide=Lus10004674 locus=Lus10004674.g ID=Lus10004674.BGIv1.0 annot-version=v1.0 ATGGATGGTCTTAAGCTCCCTAGAATTGTGCTTAGAACAAGCAATGTCTGTTCTTTCCTTGCATATGCTAGCTTCCCACTCTTGAGGGAGAGAGGCTATC TTCTTCACAGCAATCAAGATCTTCAGCCAGAAGAAGATTTGCCAATGCTTCCCCCACTGAAAGTTCGAGATCTTCCCATCATCGAAACACGACAGCAAGA AATCTTCTACCAACTGATTGTTACAGCAGTCAAGCAAATAAGGGCATCTTCAGGAATGATAATCAACACGTTTGAAGAGCTTGAGAGAGTTTCACTAGCA ACTCTGAGCCAGGATTTCCCCCATACGCCGATCTTCACGATCAGTCCATTTCACAAGTACTTTGGAAGCTCGTCCAACAGCTTGTTAGCGCAAGACCGGA GATAG
AA sequence Show only first row Show all	>Lus10004674 pacid=23174261 polypeptide=Lus10004674 locus=Lus10004674.g ID=Lus10004674.BGIv1.0 annot-version=v1.0 MDGLKLPRIVLRTSNVCSFLAYASFPLLRERGYLLHSNQDLQPEEDLPMLPPLKVRDLPIIETRQQEIFYQLIVTAVKQIRASSGMIINTFEELERVSLA TLSQDFPHTPIFTISPFHKYFGSSSNSLLAQDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	1.0	0.9825
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10014412 [exp]	1.4	0.9621
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	7.1	0.9243
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	11.0	0.9375
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	12.4	0.9122
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	15.0	0.9269
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	17.6	0.8582
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	17.7	0.9220
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	19.0	0.9034
					Lus10031407 [exp]	19.7	0.9125

Compare expression of checked genes

Lus10004674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.