Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39870 69 / 7e-13 unknown protein AT3G55690 51 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040247 [exp] 517 / 0 AT2G39870 100 / 9e-24 unknown protein Lus10021105 [exp] 59 / 2e-09 AT3G54000 90 / 8e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195800 [exp] 216 / 7e-67 AT3G54000 94 / 3e-21 unknown protein Potri.008G062200 [exp] 199 / 2e-60 AT2G39870 90 / 9e-20 unknown protein Potri.006G093000 [exp] 69 / 1e-12 AT3G54000 79 / 9e-16 unknown protein Potri.016G105000 [exp] 65 / 1e-11 AT3G54000 73 / 4e-14 unknown protein Potri.009G038600 [exp] 43 / 0.0002 AT5G59050 112 / 3e-28 unknown protein Potri.005G208800 [exp] 40 / 0.0009 AT4G02830 99 / 4e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004675 pacid=23174266 polypeptide=Lus10004675 locus=Lus10004675.g ID=Lus10004675.BGIv1.0 annot-version=v1.0 ATGGCTACCCTGTCCGTTTCCGCCAAGTCCGAGTTCAATTTCCCCTCCGAGTTCCCTTACGAGTTCCACTCTGATGTTGCCGCCGGCGATAACTTCGACG ACGAGGACGTTTTCTTCGCCGGGTTGACTCGTCGCCTCACTCAGCAGCTCTCCCTCAAGCCACAGAGGAAGCGGGTCGTGGCTGGGTCGCCCGAGTCGAC GCTGAGTGGCCTCGGAAGCATGTCGGTCTCGAGCAACGGGAGCCCCAACGGTGACCTATCCCCCACTGAAACGACGCCGTTCGGTGCTAAAAACAACACG TGGGACCTGATTTACGCTGCTGCTGACCAGGTCGCGAAGCTTAAGACGAAAAGGGACGCTCAAATCTACAGTAAGCCGACCGGGTTTGTTAAACGGACCC GCAATCCAGCTGGGTTTTACTCCTTTGACCTTAATGCCCCTCCGGAAAACCTGTACCATCAGTTCAGTGAAGAACCTGCTCGAGCAACAAAGGAACAGTA CCCTGGGCCGGCAAACTGGCAGCAGATGCCCTGTGGAAACAGAGCCGGAGGAGTGATTAGCTACGAGAATTCCAGATCTGTTCTTCGTCCTCCGCCGCCG TCGCCATCGCAGTCCATTTGGTCGCCGCCGATTCAAAATCCTCACAACATAACCCGGACGAATCCGGCGTTTCTGAGCGGCGGATCTGGTCCGAAAAGGG GCAGTGCTGGTACAGGGGTTTTCCTCCCTCGGAGATACGGAATCGCTCCACCAGATTCCAAGAACAAGCCTACTCCTTGCTCGACGGTTCTACTTCCGGC GAAGGTAGTGCATGCGCTGAACTTGAACCTCAACGAGAATGAACAAGCTCCTCCCCAGCCGCGGTTTAACCCAGCTTTCTCAGCTGATTACGCGGCTCTG TTGGCGAGGAGGAATGCGGTGTTGACCCAGCTGCAGAACAAGAGAGCAATGCTGCGAAGTACTGAAGCTGGAGGATTCAGCCATGAGAGTCGGCTTCCTC AGGATTGGACCTACTGA
AA sequence Show only first row Show all	>Lus10004675 pacid=23174266 polypeptide=Lus10004675 locus=Lus10004675.g ID=Lus10004675.BGIv1.0 annot-version=v1.0 MATLSVSAKSEFNFPSEFPYEFHSDVAAGDNFDDEDVFFAGLTRRLTQQLSLKPQRKRVVAGSPESTLSGLGSMSVSSNGSPNGDLSPTETTPFGAKNNT WDLIYAAADQVAKLKTKRDAQIYSKPTGFVKRTRNPAGFYSFDLNAPPENLYHQFSEEPARATKEQYPGPANWQQMPCGNRAGGVISYENSRSVLRPPPP SPSQSIWSPPIQNPHNITRTNPAFLSGGSGPKRGSAGTGVFLPRRYGIAPPDSKNKPTPCSTVLLPAKVVHALNLNLNENEQAPPQPRFNPAFSADYAAL LARRNAVLTQLQNKRAMLRSTEAGGFSHESRLPQDWTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39870			unknown protein		Lus10004675 [exp]	0	1
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	1.0	0.9261
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	4.0	0.9210
AT2G25270			unknown protein		Lus10001945 [exp]	4.9	0.9198
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	5.7	0.9156
AT4G06599			ubiquitin family protein (.1)		Lus10001294 [exp]	5.7	0.8761
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	6.9	0.9019
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	8.4	0.8394
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	10.1	0.8746
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	11.2	0.8780
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	11.4	0.8685

Compare expression of checked genes

Lus10004675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.