Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05940 630 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT5G02010 568 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT3G55660 498 / 5e-171 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 452 / 2e-153 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 437 / 1e-148 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 424 / 2e-143 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 396 / 1e-132 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 375 / 1e-123 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 368 / 4e-121 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G52240 364 / 2e-118 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040248 [exp] 1023 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 697 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 686 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 582 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 579 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 448 / 5e-151 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 445 / 9e-150 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 405 / 3e-135 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 400 / 4e-133 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062000 [exp] 722 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 711 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 622 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 615 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.009G140100 [exp] 463 / 2e-157 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 461 / 2e-156 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 452 / 2e-154 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 445 / 2e-151 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 441 / 4e-149 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 426 / 4e-143 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10004676 pacid=23174273 polypeptide=Lus10004676 locus=Lus10004676.g ID=Lus10004676.BGIv1.0 annot-version=v1.0 ATGGACACTATGGGGAAGAGGAGAGTTGGGTCTGAATCTGGGACGAGCAGTAGCTGCAACTATGTGGAATTCAGCTCCACCATTGAAGGAAGGAGTAGTC TTGGGAGTGATTCTCCTTCTTCTGCTTCTCGGTCTACTGGTCCTTTGGGTTGGCCCATAAAGAAGGCCGGCGAGAGGAAGAGTTCGTTGGCACCTCGGAA TGGAAGAGATGAAGGGAATGGTAGACTGTTTGAGGATTCCAAGCTCAACTCCAAGAGTTATGATTCTGATGTGGAATTGATGAAGGAGAGGTTTGCAAAA CTGTTGCTTGGAGAGGACATGTCAGGTTCTGGGAAAGGGGTTTCTACTGCTATGGCTATCTCCAATGCTATTACCAATCTCTGTGCTTCTGTGTTCGGGC AACTGTGGAGGCTCGAGCCGATAGATCCAGATAAGAAATTACTGTGGAGAAGGGAGATCGAATGGCTTCTTTGTGTTAGTGATCATATTGTAGAGTTAGT CCCCTCTTTCCAAACGTATCCCGATGGCAGTAAGCTTGAGGTAATGACTTGCAGGCCAAGGTCAGACCTTTTCATCAATCTCCCAGCGCTACGGAAGCTT GACAATATGCTTCTTGAAGTACTAGATAGTTTCACAGGCACGGAGTTCTGGTATGTGGATCAAGGGATTGTAGCAACAGATGTATCATCAGACGGGTCAG CCTCATTTCGAAAAACGATGCAGCGACAAGAGGATAAATGGTGGCTACCGGTTCCCCGTGTTCCTGCTGGCGGTCTGACCGACGATTCGAGAAAGCAGTT GAACCACACTCGCGAGTGCAGCAATCAGATACTTAAAGCTGTGATGGCAATCAACGAAGCTGCTCTAGCTGAGATGGATGTTCCTGACTCCTACTTGGAA ACTCTTCCCAAGAATGGGAGGGCTTGTCTTGGGGACTTCATATATCGGTACATTATTTCAGATAAGTTCTATCCAGACTGCTTGCTTGACTGTCTTGACC TTTCTTCCGAGCATGTTGCTCTGGGCATTGCAAACCGTGTTGAATCTGCCATCTATGTATGGCGGCGAAAATCACAAGCTCAAAAACCGCCATCAACAAC ACATTGCCGATCGTCTTCAAGGTCGTCGTGGGAAATGGTCAAGGACTTGATGGTCGACGGAGATAAGAGGGAATTTCTTGCAGAAAGAGCTGAAAGCCTC CTTCTTTGCTTGAAGCAGCGCTTTCCAAGTCTAACCCAGACTGCACTAGACACCAGCAAACTCCAATTCAACAAGGATGTTGGGAAGTCCATTCTGGAGA GCTATTCAAGAGTGCTGGAGAGCTTGGCGTTCAACATAGTTGCACGAATTGACGATTTGCTATACGTGGATGATCTGACCAAATGTTCAGACAATCTGTC ATCGGTCCCGACAGTGAGCGTGATATCACACAAGAAGGTCTCCATTCCATTCTCCTCCTCCGCCGTGTCTTCCTCAAGCACTCCTTATAACAAACCACCA CCAAGTATGGGCAGCACACCAGGAGGCTTCTCGCCTGCTCCTCATCCTCTTATCAGCCCTGCAAGAGGGGAGAGAACTCCATTTCTAAACACTACCAACA CCATCATTACTACTACCACTACCAACAACAGGAATGTTCGTCGAGGATTCGGAGTGAAGAAGGCCTTGTCGAATTATCTGGGCGTTGACACGAAATCCAA AGTCTGCGGCAACAATCCAACTGATGCGTTGTGTTTGGACCGCAGCAAATGTCATGGGAAGAGGTCTGGATTGCACCAGAATGAGAATAGGCCGCAACAG AAGTATACCGTTCCATGA
AA sequence Show only first row Show all	>Lus10004676 pacid=23174273 polypeptide=Lus10004676 locus=Lus10004676.g ID=Lus10004676.BGIv1.0 annot-version=v1.0 MDTMGKRRVGSESGTSSSCNYVEFSSTIEGRSSLGSDSPSSASRSTGPLGWPIKKAGERKSSLAPRNGRDEGNGRLFEDSKLNSKSYDSDVELMKERFAK LLLGEDMSGSGKGVSTAMAISNAITNLCASVFGQLWRLEPIDPDKKLLWRREIEWLLCVSDHIVELVPSFQTYPDGSKLEVMTCRPRSDLFINLPALRKL DNMLLEVLDSFTGTEFWYVDQGIVATDVSSDGSASFRKTMQRQEDKWWLPVPRVPAGGLTDDSRKQLNHTRECSNQILKAVMAINEAALAEMDVPDSYLE TLPKNGRACLGDFIYRYIISDKFYPDCLLDCLDLSSEHVALGIANRVESAIYVWRRKSQAQKPPSTTHCRSSSRSSWEMVKDLMVDGDKREFLAERAESL LLCLKQRFPSLTQTALDTSKLQFNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKCSDNLSSVPTVSVISHKKVSIPFSSSAVSSSSTPYNKPP PSMGSTPGGFSPAPHPLISPARGERTPFLNTTNTIITTTTTNNRNVRRGFGVKKALSNYLGVDTKSKVCGNNPTDALCLDRSKCHGKRSGLHQNENRPQQ KYTVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	1.0	0.9062
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	4.5	0.8925
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	5.9	0.8873
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	10.5	0.8770
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	10.6	0.9017
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	15.4	0.8432
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	16.5	0.8694
AT5G26910			unknown protein		Lus10037725 [exp]	18.2	0.9011
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	21.9	0.8533
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	23.0	0.8825

Compare expression of checked genes

Lus10004676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.