Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39855 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040250 [exp] 157 / 2e-49 AT2G39855 64 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004678 pacid=23174249 polypeptide=Lus10004678 locus=Lus10004678.g ID=Lus10004678.BGIv1.0 annot-version=v1.0 ATGGAAAACAAGCGACAAGTTGGTGGCAGCGGCAGCGGCAGCGGCTCTGCTTCTAATTACTCCACCTCTTCATCATCATCCGTCTCTTCTGGGTCGTTGG ATCACATCTTCGGTCCAAAGGACTCATCTTCTGCCTCTAATTCCTCCTACTTTGGGTCCATCTTCCCCCCTCCCAATGCAGCCGGAGCTCACAGATACCC CAACTCCACTCCTCCTCCAGAGAATAATTGTAATGGGTTCAGTTCATCAATCTACTACGGCGGGCAGGAAAATTACTCTTCTAATCCTGCGGCCACCACC AGCAACAACATTAATAACCACAATTCCTCCGTTGACCACCGTTACAAGAAAGACGGTGGAGATGACGACTCCAACGGCAACAACTCTAACTCTGCCTCTA GAGGCAACTGGTGGCAAGTGGAAACTGGTGGCAGTGACGAACATGCACCGGTTGGTTCATATTGCAGGACTGGATTGCCAACGGAAATAAAGATGAGGGG GGATAATGTGATTTTGAGATAG
AA sequence Show only first row Show all	>Lus10004678 pacid=23174249 polypeptide=Lus10004678 locus=Lus10004678.g ID=Lus10004678.BGIv1.0 annot-version=v1.0 MENKRQVGGSGSGSGSASNYSTSSSSSVSSGSLDHIFGPKDSSSASNSSYFGSIFPPPNAAGAHRYPNSTPPPENNCNGFSSSIYYGGQENYSSNPAATT SNNINNHNSSVDHRYKKDGGDDDSNGNNSNSASRGNWWQVETGGSDEHAPVGSYCRTGLPTEIKMRGDNVILR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39855			unknown protein		Lus10004678 [exp]	0	1
AT5G41810			unknown protein		Lus10003901 [exp]	2.2	0.9830
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	3.2	0.9786
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	3.5	0.9686
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	5.1	0.9686
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	5.3	0.9707
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	6.9	0.9768
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	7.7	0.9697
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	7.7	0.9740
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	8.1	0.9733
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	8.9	0.9666

Compare expression of checked genes

Lus10004678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.