Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004679 pacid=23174284 polypeptide=Lus10004679 locus=Lus10004679.g ID=Lus10004679.BGIv1.0 annot-version=v1.0 ATGGTGGTCGTGAAGAAAGTGCTCACACTTCTTCTACTTACTATGATCATCGCGCTCGTAGTTCCTCGTAGTGGTCCAATCGTTACAGAAGCAGCCAGGA CAATCAACCAACAAGGTACGTACATATATGATAAAGTACGTACGTCTATGCTCAGGGTCTCCAAGGTTTCGCTATTGATCGGTCGTTTGATTGCAGTCGA AGGGATGAAGCGGTCGAAGGAGGAGGTTTACTCCAAGCTCGGGTTGATATGCAAGTGTTGTGATGGAGGAAGGTGCAGTAGCTCATGGGACTCATCATGC TCCAACCTCAAATGTTCTTCCTGGAGGAACTACTAA
AA sequence Show only first row Show all	>Lus10004679 pacid=23174284 polypeptide=Lus10004679 locus=Lus10004679.g ID=Lus10004679.BGIv1.0 annot-version=v1.0 MVVVKKVLTLLLLTMIIALVVPRSGPIVTEAARTINQQGTYIYDKVRTSMLRVSKVSLLIGRLIAVEGMKRSKEEVYSKLGLICKCCDGGRCSSSWDSSC SNLKCSSWRNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004679 [exp]	0	1
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	1.0	0.9143
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	2.0	0.9069
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	3.9	0.8964
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012395 [exp]	4.5	0.8772
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	6.5	0.9060
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	6.9	0.8645
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	7.3	0.8798
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	8.9	0.9020
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	9.9	0.8738
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	10.7	0.8866

Compare expression of checked genes

Lus10004679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.