Plant FIBer expression Database

Lus10004681 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59100 240 / 5e-73 Subtilisin-like serine endopeptidase family protein (.1)
AT5G58820 237 / 4e-72 Subtilisin-like serine endopeptidase family protein (.1)
AT5G59190 236 / 4e-72 subtilase family protein (.1)
AT3G46850 235 / 2e-71 Subtilase family protein (.1)
AT3G46840 235 / 3e-71 Subtilase family protein (.1)
AT5G58830 234 / 5e-71 Subtilisin-like serine endopeptidase family protein (.1)
AT5G58840 231 / 9e-70 Subtilase family protein (.1)
AT5G59130 230 / 2e-69 Subtilase family protein (.1.2)
AT5G59120 229 / 7e-69 ATSBT4.13 subtilase 4.13 (.1)
AT5G59090 229 / 9e-69 ATSBT4.12 subtilase 4.12 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004682
[exp]
337 / 4e-111 AT5G59190 555 / 0.0 subtilase family protein (.1)
Lus10040253
[exp]
309 / 1e-99 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3)
Lus10004685
[exp]
306 / 5e-98 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1)
Lus10004683
[exp]
298 / 3e-95 AT5G59190 600 / 0.0 subtilase family protein (.1)
Lus10000395
[exp]
282 / 5e-94 AT4G00230 269 / 1e-84 xylem serine peptidase 1 (.1)
Lus10009867
[exp]
298 / 2e-91 AT5G59190 629 / 0.0 subtilase family protein (.1)
Lus10040251
[exp]
288 / 1e-90 AT5G59190 438 / 6e-143 subtilase family protein (.1)
Lus10009868
[exp]
282 / 1e-89 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Lus10004686
[exp]
271 / 9e-85 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G196800
[exp]
315 / 9e-102 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.010G196700
[exp]
313 / 1e-101 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.010G196900
[exp]
271 / 6e-85 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.009G038001
[exp]
251 / 5e-77 AT3G46850 794 / 0.0 Subtilase family protein (.1)
Potri.009G037900
[exp]
250 / 5e-77 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.012G133200
[exp]
252 / 7e-77 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3)
Potri.003G120101
[exp]
243 / 5e-75 AT5G59190 536 / 0.0 subtilase family protein (.1)
Potri.005G067200
[exp]
233 / 4e-70 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.014G074500
[exp]
223 / 1e-67 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
Potri.007G102100
[exp]
225 / 4e-67 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00082 Peptidase_S8 Subtilase family
Representative CDS sequence
>Lus10004681 pacid=23174277 polypeptide=Lus10004681 locus=Lus10004681.g ID=Lus10004681.BGIv1.0 annot-version=v1.0
ATGGTTCCACAAATTTCACAGACTTTGTTGGTTCTTCTCACAGTACTATCTCATCTCCTTACCAACTGTACTGCTGCTTCAGATGACACTCGTCAGGTTC
ATATAGTGTACATGGGAGACAATACTGCTACTGTCTCCACAGCAGAATTCCACACCAATATGCTACACAAAGCTCTTGGCAGAAACCCAAAAGCAACAAT
ATTCAAGACCATTGAGAAGAAGACCGAATTTGCGCCCATCGTTGCAGATTTTTCGTCTCGAGGACCGAATATTATACTACCTGACCTTCTCAAGCCTGAC
ATTGCAGCTCCTGGAGTGGACATCATGGCTGCTTTTTCGGAGGCAACTACAGTGACCGGAATCGTAGGCGACAAACGAAAAGTTTCTTACAACATCATAT
CCGGAACTTCCATGGCTTGTCCCCATGCAACTGGAGCTGCAGCTTATATCAAATCCTTCCATCCCACATGGTCCCCTGCAGCCCTCAGGTCCGCTTTAAT
GACCACAGCCACTCCACTGAAATCAGCCAACAATCCTGAAGCAGAATTCGCATATGGGTCAGGACTCATAAACCTCGATCGGGCAGCTGATCCCGGACTT
GTATACGACGCAAGAGAACGCGACTACATCGAGCTGTTGTGCGGGCAAGGATACAACGGCACTCAAATCAGACTAATAACCGGAGAACATGTGGATTGTT
CGAAAGTGGAAGAGTCGTCTGTGTGGAATCTGAACTACCCTTCCTTCACCGTGTCAGGAAAACCGGGGACAACTGTGAAAAGGGTGTTCCGTAGAACTGT
TACTAACGTCGGCACCTCGAATTCCAAGTACAAGGCCAAGCTTATTCTAAAGTCTAATTCCGAAGAAATTACAGTGAAAGTTGACCCGAAAGTTCTGCAT
TTCGAATCTAAAGGGGAAACATTGTCGTTTCGTGTCACTGTCAAGGTGAAGTTGAAGCAAAATGGGATCGTCTCTGGTGCTTTGATCTGGTCTGATGGGT
CTCATGATGTCAGGACCCCTATTGTGGCCCACACACAACTCTAA
AA sequence
>Lus10004681 pacid=23174277 polypeptide=Lus10004681 locus=Lus10004681.g ID=Lus10004681.BGIv1.0 annot-version=v1.0
MVPQISQTLLVLLTVLSHLLTNCTAASDDTRQVHIVYMGDNTATVSTAEFHTNMLHKALGRNPKATIFKTIEKKTEFAPIVADFSSRGPNIILPDLLKPD
IAAPGVDIMAAFSEATTVTGIVGDKRKVSYNIISGTSMACPHATGAAAYIKSFHPTWSPAALRSALMTTATPLKSANNPEAEFAYGSGLINLDRAADPGL
VYDARERDYIELLCGQGYNGTQIRLITGEHVDCSKVEESSVWNLNYPSFTVSGKPGTTVKRVFRRTVTNVGTSNSKYKAKLILKSNSEEITVKVDPKVLH
FESKGETLSFRVTVKVKLKQNGIVSGALIWSDGSHDVRTPIVAHTQL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59100 Subtilisin-like serine endopep... Lus10004681
[exp]
0 1

Lus10004681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.