Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59190 555 / 0 subtilase family protein (.1) AT5G59100 546 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 535 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59120 534 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 530 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46850 528 / 5e-180 Subtilase family protein (.1) AT5G58830 526 / 8e-180 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 522 / 3e-178 Subtilase family protein (.1) AT3G46840 520 / 5e-177 Subtilase family protein (.1) AT5G03620 511 / 2e-173 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040251 [exp] 951 / 0 AT5G59190 438 / 6e-143 subtilase family protein (.1) Lus10040253 [exp] 693 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 691 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 691 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 676 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 665 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10000396 [exp] 608 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004686 [exp] 588 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 576 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 739 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 734 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 709 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 615 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.012G133200 [exp] 600 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 587 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 567 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 552 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G037900 [exp] 547 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074500 [exp] 513 / 2e-176 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10004682 pacid=23174271 polypeptide=Lus10004682 locus=Lus10004682.g ID=Lus10004682.BGIv1.0 annot-version=v1.0 ATGCTGTACAGTTACAAGAGAAGCTTCAGCGGTTTTGCTGCGATGCTGACAAGCGAGGAGGTACGGAAACTATCAGGAGTTTGGCCGGAATCTAAGAGTT TCAGCGATCAAGGGTTTTGTCCACCTCCTAAAAAATGGAAGGGCAGCTGCATCAAGTCAGAAAATTTCACCTGCAACAACAAGATAATTGGAGCAAAGTA CTACAGGATGTCTAAGAACTTCACTTATGATGTGGCTTCACCAAGGGATACAGAAGGCCACGGCTCCCATACCGCATCAACAGCAGCAGGAAACTTTGTT CCCAAGGCAAGCCTTGAAGGACTTGGTGTGGGAACAGCTCGGGGAGGCGTTCCATCTGCACGCATTGCGGTCTATAAAGTCTGCTGGGCTGATGGTTGTA ATGATGCTGATGTTCTAGCAGCGTTCGATGATGCTATTGCTGACGGAGTCGACATAATCTCTGCGTCCATGGGAGGAGCTAAGCCTAGAGGTTACTTCGC AGACTCGATCGCCATTGGGTCGTTCCATGCTATGCAACATGGCATTCTTACCTCAACCGCTGCTGGCAATGCCGGTCCTAAACCGAAATCGGTTTTCAAT GTCGCGCCTTGGCTTCTATCCGTGGCAGCTAGCAGCATAGACAGGAAGTTCATTACAAAAGTTCAGCTAGGAAATGGAGCTTCATATGAGGGAGTTTCTA TCAATACAATTGATCTTCATCCCACGATGTATCCTGTTATCTATGGTGGTCTTGCCCCAAAGTTGAAGAGACCTAATGTCACTGCAGCCAGGCAATGCCT CAAAGGGTCATTGGAAAGAAGACTGGTGAGAGGAAAGATTGTCCTTTGTGACTTAATAGGTAGTGGAGAATCAGTGTCTGCTGCAGGAGGAAAAGGTGCG ATAATGCAAGACAACAAGTACAATGATGTGGCTTTCAGTTTTGCTGTGCCGGCTGCCCACTTTGGTCAAGATGTTGGATCCAAAATCTCAGCTTATTTGA AACAGACAAAAAATGCCACTGCAACACTGTTCAAGAGTACTCACCGAAGAGACGAATCAGCTCCGTTTATAGTCGGGTTTTCGTCGAGAGGACCTAATGC CATAAACGAAGACATCCTCAAGCCTGACATTGCAGCTCCTGGTTCAGACATCCTGGCTGCGTGGTCTCCAGCTACCACAGTAACAGGGCTAATGGGAGAT AAAAGAGTGACTGAATACAACATGATCTCAGGAACATCCATGGCTTGTCCTCATGCAACTGGTGTAGCTGCATATGTCAAGTCCTTTCATCCAACTTGGT CCCCTGCTGCCCTTAGGTCTGCTCTAATGACAACAGCAATGCCAATGAGCCGTACCAAGAATCAGGATGCAGAATTCGCGTACGGGTCAGGCCTCATAAA CCCAACAAAGGCAGTGGATCCCGGTTTAATATATGATACTTCAGAGGAAGATTATGTTCACTTCTTGTGTGGACAAGGCTACAACAGCTCACAAATGAAG GTCATCACAGGCAAAGACATCCGGTGCTCCAACGAAAAGAAGCTCGCGGTTTGGGATCTCAACTACCCTTCATTTACCTTGTCTTCCAAGTCTGGCGGGA CAGTGACAAGGGTTTTCCATCGAACTGTAACGAATGTGGGGACACATGCATGCAGTTACACGGTAGAAGTGAAGGCTCCTAAAGAACTTTTGCTCAAAGT TACACCTGAAGCTCTGTTTTTCCAGTCTGATGGGGAGAGCAAGTCGTTTACTGTAAGCGTGACGGCTAAGTTGTTGGGTAGAAGGTCTGTATCTGGGGCT TTGATTTGGTCTGATGGAGAGCATACTGTGAGAAGCCCTATTGTTGCTTACCCTTTATGA
AA sequence Show only first row Show all	>Lus10004682 pacid=23174271 polypeptide=Lus10004682 locus=Lus10004682.g ID=Lus10004682.BGIv1.0 annot-version=v1.0 MLYSYKRSFSGFAAMLTSEEVRKLSGVWPESKSFSDQGFCPPPKKWKGSCIKSENFTCNNKIIGAKYYRMSKNFTYDVASPRDTEGHGSHTASTAAGNFV PKASLEGLGVGTARGGVPSARIAVYKVCWADGCNDADVLAAFDDAIADGVDIISASMGGAKPRGYFADSIAIGSFHAMQHGILTSTAAGNAGPKPKSVFN VAPWLLSVAASSIDRKFITKVQLGNGASYEGVSINTIDLHPTMYPVIYGGLAPKLKRPNVTAARQCLKGSLERRLVRGKIVLCDLIGSGESVSAAGGKGA IMQDNKYNDVAFSFAVPAAHFGQDVGSKISAYLKQTKNATATLFKSTHRRDESAPFIVGFSSRGPNAINEDILKPDIAAPGSDILAAWSPATTVTGLMGD KRVTEYNMISGTSMACPHATGVAAYVKSFHPTWSPAALRSALMTTAMPMSRTKNQDAEFAYGSGLINPTKAVDPGLIYDTSEEDYVHFLCGQGYNSSQMK VITGKDIRCSNEKKLAVWDLNYPSFTLSSKSGGTVTRVFHRTVTNVGTHACSYTVEVKAPKELLLKVTPEALFFQSDGESKSFTVSVTAKLLGRRSVSGA LIWSDGEHTVRSPIVAYPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10004682 [exp]	0	1
					Lus10016819 [exp]	4.7	0.8398
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	45.3	0.8354
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010476 [exp]	58.0	0.7823
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	75.8	0.8296
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004568 [exp]	89.0	0.7935
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	95.8	0.8017
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	113.9	0.7945
AT4G33890			unknown protein		Lus10011423 [exp]	114.1	0.7771
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	147.1	0.7901
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	161.8	0.7813

Compare expression of checked genes

Lus10004682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.