Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 562 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 562 / 0 subtilase family protein (.1) AT5G59120 558 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 551 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT4G00230 542 / 0 XSP1 xylem serine peptidase 1 (.1) AT3G46840 541 / 0 Subtilase family protein (.1) AT3G46850 541 / 0 Subtilase family protein (.1) AT5G58840 539 / 0 Subtilase family protein (.1) AT5G58820 532 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 526 / 6e-179 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009868 [exp] 912 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 889 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 880 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 875 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 701 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004682 [exp] 630 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 624 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 583 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 553 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 867 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 812 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 756 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 615 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 595 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 577 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 569 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 563 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.006G114500 [exp] 553 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 500 / 8e-168 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10004683 pacid=23174257 polypeptide=Lus10004683 locus=Lus10004683.g ID=Lus10004683.BGIv1.0 annot-version=v1.0 ATGGGCGATCGGCCCAACATCTCAGAAACTACTTCACCTTCAGCTCTTCACATCAGCATTCTTCAACAAATCACTGGCAGCAGCAGTGAAAATCTAGCTT CAGATTCCTTGGTGTATAGCTACCACAGGAGCTTCAATGGCTTCGCCGCCTGGCTCACTCACTCCCAGCAGCTCAAACTTTCTGGTTATGAAGGTGTAGT GTCTGTTTTCCCAAGTGAGAAGAAGAAACTCCACATCACAAGGTCATGGGACTTTCTAGGGTTCCCGCAGAACGTCAACAGAGCAACAATGGAGAGCGAC GTCATCATAGGGATGCTCGACACTGGAATTTGGCCTGAGTCACAGAGCTTCAACGATTCTGGTTACGGTCCACCTCCACATAAATGGAAGGGTACCTGCC AGTCATCTTCCAATTTCACCTGTAACAATAAGATAATTGGAGCTAGGTACTATCATACTGGACGAAACTTTAGCAGTGATGACATTCCCTCGCCAAGAGA TTCTGATGGGCATGGAAGTCACACTGCATCTACAGCAGCTGGGAACTTGGTCAGTGCTGCAAGTCTCCTTGGAATTGCCTCTGGAACTGCTCGCGGCGGA GTGCCTTCTGCTAGAATTGCAGTCTACAAGATTTGTTGGGCTGATTTATGTCACGGGGCTGATATTCTTGCAGCTTTTGATGATGCTATTGCAGATGGAG TTGACATTATCTCCTTGTCAGTTGGAGGTTCGCCGCTCGATTATTTCCTGGACCCCATTGCTATTGGTGCCTTCCATTCGATGAAGAACGGGATTCTCAC GTCGAATTCAGCTGGTAACGAAGGCTCGGCTCCTGAGTCGGTCTCGAATTGCTCTCCTTGGTCGCTCTCCGTGGGTGCTAGCACCATTGATAGGAAGTTT ACAACTGGGTTGAAATTAGGCAATGGCAGATTTTATCAGATGCACAAAACAAAACAGCAGGACACAGTTCAAGGTGACATGGGGACGAAAAAGTACTGTG ATCCGGGCAGTTTGGACAAGAGTCTTGTGGATGGGAAGATTTTGCTTTGTGATAATGTAGGCGAAGGGGAGGAACCACTTAGAGTCGGTGCCACTGGTTC AATAATGACTACATCTTACACTGAAGATGATGCATATAACTTCCCTTTACCTGTTTCCATCTTGACTGATGCTGAAGGAGCTGACATTGTGGACTACATA CACTCCTCTAGCGATCCAACTGCTGAAATATTCAACACTCATGACTACATTGATAATTCATCTTCGTACGTGATCTACTTTTCTTCAAGGGGGCCTAACC CGATAACACGAGACATTCTCAAGCCGGATCTTACAGCACCTGGAGTTGATATCCTTGCAGCATGGTCTGGAGCTACAACTGTAACAGGCCTTGCTGGAGA CACAAGAGTTGTCCCATATAACATCATCTCCGGCACTTCCATGTCTTGCCCCCATGCGACTGCAGCAGCAGCTTACGTTAAATCGTTCCATCCTACATGG TCCCCTGCGGCCCTCAAGTCTGCTCTAATGACCACAGCTCATCCCATTAGTGTCAAAGACATACCTGATACTGAGTTTGGATACGGATCAGGCCAGATCG ATCCCATAAGGGCTGCCGATCCTGGACTTGTATATGATGCCGGGGAGTTTGATTATGTTAGAATGCTGTGTGGCCAAGGATACAATATTACTCAACTCCG ACTTGTCACAGGAGATCAAACTGCTTGTTCCGCAGCAATGAATGGAACCGTTTGGGATCTGAACTATCCTTCTTTTGCACTATCATCAGAAAAGCCTAAG ACATCTGTTACTCGCGTGTTTCACAGAACTGTCATGAATGTGGGACCAGCATCGTCAACTTACAAGCCCTTGGTTGAAGTTCCTGTAGGCCTTAAGGTAC AAGTCGAACCTGAGGTGCTCACTTTCAACAGCATTGGGGAGATACAGTCCTTTGTTGTGACAGTCACGGCTCTGCTGGGAAGAACAATGTTGTCTGGCTC TTTGGTCTGGAGTGATGGGATTCATTTCGTGAGTAGTCCCATCGTCGCATTTGTGGCACCTCAGCGAAGATAA
AA sequence Show only first row Show all	>Lus10004683 pacid=23174257 polypeptide=Lus10004683 locus=Lus10004683.g ID=Lus10004683.BGIv1.0 annot-version=v1.0 MGDRPNISETTSPSALHISILQQITGSSSENLASDSLVYSYHRSFNGFAAWLTHSQQLKLSGYEGVVSVFPSEKKKLHITRSWDFLGFPQNVNRATMESD VIIGMLDTGIWPESQSFNDSGYGPPPHKWKGTCQSSSNFTCNNKIIGARYYHTGRNFSSDDIPSPRDSDGHGSHTASTAAGNLVSAASLLGIASGTARGG VPSARIAVYKICWADLCHGADILAAFDDAIADGVDIISLSVGGSPLDYFLDPIAIGAFHSMKNGILTSNSAGNEGSAPESVSNCSPWSLSVGASTIDRKF TTGLKLGNGRFYQMHKTKQQDTVQGDMGTKKYCDPGSLDKSLVDGKILLCDNVGEGEEPLRVGATGSIMTTSYTEDDAYNFPLPVSILTDAEGADIVDYI HSSSDPTAEIFNTHDYIDNSSSYVIYFSSRGPNPITRDILKPDLTAPGVDILAAWSGATTVTGLAGDTRVVPYNIISGTSMSCPHATAAAAYVKSFHPTW SPAALKSALMTTAHPISVKDIPDTEFGYGSGQIDPIRAADPGLVYDAGEFDYVRMLCGQGYNITQLRLVTGDQTACSAAMNGTVWDLNYPSFALSSEKPK TSVTRVFHRTVMNVGPASSTYKPLVEVPVGLKVQVEPEVLTFNSIGEIQSFVVTVTALLGRTMLSGSLVWSDGIHFVSSPIVAFVAPQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10004683 [exp]	0	1
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	10.5	0.6378
					Lus10029487 [exp]	47.4	0.5761
AT4G35160			O-methyltransferase family pro...		Lus10038331 [exp]	47.7	0.5688
AT1G05070			Protein of unknown function (D...		Lus10015556 [exp]	67.3	0.5277
AT1G15680			F-box family protein (.1)		Lus10002769 [exp]	70.0	0.5585
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	85.4	0.5292
AT3G07450			Bifunctional inhibitor/lipid-t...		Lus10030541 [exp]	91.6	0.5023
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	129.6	0.5290
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10012828 [exp]	161.7	0.5130
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	189.7	0.4998

Compare expression of checked genes

Lus10004683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.