Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01630 322 / 1e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 155 / 3e-46 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 106 / 5e-27 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 105 / 1e-26 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 103 / 7e-26 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 99 / 2e-24 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G09160 95 / 6e-22 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT5G63060 86 / 6e-20 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G30690 86 / 5e-19 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G05370 84 / 3e-18 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040252 [exp] 486 / 1e-176 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 354 / 1e-124 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 352 / 6e-124 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003699 [exp] 166 / 2e-50 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10001584 [exp] 165 / 2e-50 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 141 / 3e-41 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 101 / 2e-25 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 100 / 9e-25 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 97 / 6e-24 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063966 [exp] 342 / 3e-119 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 325 / 6e-113 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 317 / 8e-110 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G135600 [exp] 160 / 1e-48 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 159 / 6e-48 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 151 / 6e-45 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 109 / 5e-28 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 101 / 3e-25 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 101 / 3e-25 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 100 / 1e-24 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10004684 pacid=23174283 polypeptide=Lus10004684 locus=Lus10004684.g ID=Lus10004684.BGIv1.0 annot-version=v1.0 ATGCTGTCAACAGACAGCCATCAAGTTCTTAACCCAGATCACAAGCAGCATCAGCATCAGAAGGAGGAGGATGATGCTGCTGCTGCAGAGAAGACCAAGT TAGGCCTTTTGAGGCACTTGGCAGAGCGCCATGATCCCTCTTCCACGGAGGAAGTGGAAGATGCGACACTGAGGAGGTTTCTGAGGGCCAGAGACATGGA TGTTGAGAAAGCATCCGCCATGTTTCTCAAATATCTCAAGTGGCGGCGTAGTTTCGTCCCTGTTTCAGTTACAGACATCCCCACCGACATCTCTCAGGAC AAAACGTTTGTCCAAGGTTCTGACAAGACTGGCCGTCCGATCTGCGTTGTCCTCGGAGCTCGCCATTTCCAGAATAAGATCGGCGGTGTTGAAGAGTTCA AGCGTTATATAGTTTATGTCCTGGACAAACTCTGCTCCAGGATGGAAGCAGGACAAGAGAAGTTTGTGGTGATAGGAGATCTGGAAGGGTGGGGATATGC AAACAGCGACATCCGTGGATATCTGGCAGCTCTGCACATTCTGCAGGATTACTACCCAGAAAGACTGGGAAAGCTCTTCATTCTACACGTCCCTTACGTT TTCATGGCTGTCTGGAAAGTCGTTTACCCTTTCATCGACTGCAACACCAGGAAGAAGATTGTGTTTGTGGAGAACAAGAAGCTGACGTCAACCCTTTTGG AGGACATCGACGAAAGCCAGCTTCCCGATGTGTACGGCGGGAAACTGGGTTTGGTACCAATTCAGGAGACTTGTTGA
AA sequence Show only first row Show all	>Lus10004684 pacid=23174283 polypeptide=Lus10004684 locus=Lus10004684.g ID=Lus10004684.BGIv1.0 annot-version=v1.0 MLSTDSHQVLNPDHKQHQHQKEEDDAAAAEKTKLGLLRHLAERHDPSSTEEVEDATLRRFLRARDMDVEKASAMFLKYLKWRRSFVPVSVTDIPTDISQD KTFVQGSDKTGRPICVVLGARHFQNKIGGVEEFKRYIVYVLDKLCSRMEAGQEKFVVIGDLEGWGYANSDIRGYLAALHILQDYYPERLGKLFILHVPYV FMAVWKVVYPFIDCNTRKKIVFVENKKLTSTLLEDIDESQLPDVYGGKLGLVPIQETC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	0	1
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	1.0	0.9630
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	1.7	0.9426
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	2.0	0.9610
AT5G06270			unknown protein		Lus10004209 [exp]	3.2	0.9282
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	3.5	0.9277
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	4.5	0.9130
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	5.7	0.9005
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	5.7	0.9418
					Lus10007128 [exp]	7.3	0.8966
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	8.8	0.9109

Compare expression of checked genes

Lus10004684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.