Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59090 589 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G03620 589 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 583 / 0 ATSBT4.13 subtilase 4.13 (.1) AT4G00230 580 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59100 575 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 575 / 0 Subtilase family protein (.1) AT5G58830 575 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 558 / 0 Subtilase family protein (.1) AT3G46840 555 / 0 Subtilase family protein (.1) AT5G59190 550 / 0 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040253 [exp] 1302 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 927 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 881 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 870 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 689 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004686 [exp] 645 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 637 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 629 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10042555 [exp] 601 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 923 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 834 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 795 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 693 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.006G114500 [exp] 615 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 612 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 589 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.009G037900 [exp] 587 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 582 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G145600 [exp] 504 / 3e-169 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10004685 pacid=23174291 polypeptide=Lus10004685 locus=Lus10004685.g ID=Lus10004685.BGIv1.0 annot-version=v1.0 ATGGCAAGAGCTAATCCAACTCCTCCAATGTCAGGGCTCCTAGCCATCTGCAGTCTCGCCTGCTGCCTCGTGTTCCTTGTTGCTTCTTGTCGCGCCACCT CTGTAAATGGCTACGTTCATCTTTCTCACCAACGAAAGGTGTATATAGCCTACATGGGCGACCGTCCAAAGACTGATATTCCAGCTTCTGCACTTCACTC CAGCTTACTTCAGCACATAACTGGCAGTGCCAAGCTTGCCGCCGAGTCGTTGGTCTACAGCTACCACAGGAGCTTCAATGGATTCGCTGCCAGGCTCACA AAAGCTGAGAAGAACAAGCTCTCTGCGTACGAAGGTGTAGTTTCAGTGTTTCCTAGTAAGTTTCGGAAGCTACACACCACTAGGTCATGGGATTTCATCG GCTTCCCCCAAAATGTCACGAGATCCACCGGAGAAAGCGACGTCATCGTCGGAATGCTCGACACCGGAGTTTGGCCGGAATCCAAGAGCTTCAATGATTC TGGATATGGTCCACCTCCGAAGAAATGGAAGGGTTCCTGCCAATCCTCCAAATTCACCTGCAACAATAAGATCATTGGAGCCAAGGCCTACAACGCTGAA GGAAAACTCACTGCATCAGAGAAACCTTCACCAAGGGACACCGAAGGGCATGGAACTCACACTGCATCCACAGCAGCAGGGACCATTGTCACTCCGGCCA GTCTCCTCGGACTTGCCTCCGGCACTGCCCGAGGAGGGGTCCCTTCTGCTCGGATTGCAGTCTACAAGATCTGCTGGGCTGCTGGATGTTCGGATGTCGA TATTCTTGCAGCTTTCGACGATGCAATTGCTGACGGGGTTGACATAATCTCCCTCTCAGTTGGTGGTGCTCCAACTGAATATTTTCAAGATCCTATTGCT ATTGGAGCTTTCCATTCTATGAAGCATGGGATTCTCACGTCCAACTCGGCTGGTAACGAAGGTCCTTCCCCGAAAACCGTATCGAATTGCTCCCCGTGGT CGCTCTCTGTTGGTGCTAGCACCATTGATAGGAAGTTTGCAACTGTTGTCAAGTTGGGGAATGGAAAATATCATAAGGGTAGCTCTCTAAACACTTTTCA ACCCAAGGAAAAGACATATCCTCTCATCTATGGAGGAGATGCTCCAAATACGACTGCAGGATATGATGGAAACGTTTCTAAGTACTGCTACTCGGATTCG TTGGATAAGAATCTGGTGCGAGGAAAAATTGTGTATTGCGATGTTAGCAGCGAGGGAGATGGACCGGTAGCCGCTGGTGCTGCTGGAGCTATAATGGGGA ACTCGGACCAAGGCGACGTGATGTTTCCTTTCCCTTTGCCTGTTTCTCTCTTGACCAAAACCGACGGAGATGAAGTTCTCGAGTACTCGAAATCAACTAG TCACCCAACTGCAGTGGTATTCAAAACGATCGACTACACGAACGACTCATCCGGCCCCTATGTGGTTTACTTCTCCTCGAGGGGGCCTAACCCGATTACA AGCGACATTCTCAAACCGGACCTGACAGCACCTGGAGTTAATATCCTGGCAGCATGGTCAGAAGGTACAAGTATGTCGGGTCTTCCTGGAGACGAAAGAG TTGTTCCTTATAACATCATCTCTGGTACTTCCATGTCTTGCCCCCACGCAACCGCAGCAGCAGCTTATGTTAAATCGTTCCACCCTGATTGGTCCCCTGC CGCGATCAAGTCTGCTCTAATGACAACAGCACGACCGTTCGATGCAAAGGACAACACTGACGCTGAATTTGCATACGGATCAGGCCAAATAAACCCCGCA CAAGCTGCAGATCCAGGATTAGTCTACGATGCCGGGGAGACTGACTACGTAAAATTACTTTGCGGCCAAGGATACTCAACCAAGCAACTACGGCTGGTCA CAGGAGACCAGAGCGCCTGTTCCGCAACGACAAACGGAACCGTGTGGGATCTGAACTACCCTTCGTTCGCTCTATCGTCGACCTCAGCAGGGCAATCCGT CAGCAAGGCGTTCCATAGAACCGTTACGAATTTTGGAACGGGGAACGCCACGTATAAGGCAATAGTGAATGCAGCAGCAGGGCTTACGTTGAAAGTTGAA CCAAGTGTGCTTTCTTTCAAGAGTGTTGGGGAGAAACAGTCGTTTGTCTTGACTGTCTCGGCTGTGGTTGGAAACTCTACGACTTCTGGTTCTTTGGTGT GGAGTGATGGGGAGCATACTGTGAGGAGTCCTGTTGTGGCTTTTGTGTCGTCAACCGAGTGA
AA sequence Show only first row Show all	>Lus10004685 pacid=23174291 polypeptide=Lus10004685 locus=Lus10004685.g ID=Lus10004685.BGIv1.0 annot-version=v1.0 MARANPTPPMSGLLAICSLACCLVFLVASCRATSVNGYVHLSHQRKVYIAYMGDRPKTDIPASALHSSLLQHITGSAKLAAESLVYSYHRSFNGFAARLT KAEKNKLSAYEGVVSVFPSKFRKLHTTRSWDFIGFPQNVTRSTGESDVIVGMLDTGVWPESKSFNDSGYGPPPKKWKGSCQSSKFTCNNKIIGAKAYNAE GKLTASEKPSPRDTEGHGTHTASTAAGTIVTPASLLGLASGTARGGVPSARIAVYKICWAAGCSDVDILAAFDDAIADGVDIISLSVGGAPTEYFQDPIA IGAFHSMKHGILTSNSAGNEGPSPKTVSNCSPWSLSVGASTIDRKFATVVKLGNGKYHKGSSLNTFQPKEKTYPLIYGGDAPNTTAGYDGNVSKYCYSDS LDKNLVRGKIVYCDVSSEGDGPVAAGAAGAIMGNSDQGDVMFPFPLPVSLLTKTDGDEVLEYSKSTSHPTAVVFKTIDYTNDSSGPYVVYFSSRGPNPIT SDILKPDLTAPGVNILAAWSEGTSMSGLPGDERVVPYNIISGTSMSCPHATAAAAYVKSFHPDWSPAAIKSALMTTARPFDAKDNTDAEFAYGSGQINPA QAADPGLVYDAGETDYVKLLCGQGYSTKQLRLVTGDQSACSATTNGTVWDLNYPSFALSSTSAGQSVSKAFHRTVTNFGTGNATYKAIVNAAAGLTLKVE PSVLSFKSVGEKQSFVLTVSAVVGNSTTSGSLVWSDGEHTVRSPVVAFVSSTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	7.9	0.7324
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	11.7	0.7821
					Lus10004903 [exp]	14.5	0.7020
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	17.0	0.7414
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	19.7	0.7557
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036117 [exp]	21.6	0.7492
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	29.5	0.7505
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	33.0	0.7061
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	36.7	0.6648
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	41.4	0.7226

Compare expression of checked genes

Lus10004685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.