Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 561 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 559 / 0 Subtilase family protein (.1) AT3G46840 556 / 0 Subtilase family protein (.1) AT5G59190 548 / 0 subtilase family protein (.1) AT5G59120 545 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 537 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58840 531 / 1e-179 Subtilase family protein (.1) AT5G59130 529 / 1e-178 Subtilase family protein (.1.2) AT5G58820 515 / 1e-173 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 514 / 4e-173 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009867 [exp] 655 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 648 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 640 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004683 [exp] 617 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 595 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 580 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 555 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 554 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10016482 [exp] 542 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196900 [exp] 753 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 671 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 631 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 602 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 591 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 554 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 552 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.002G151900 [exp] 516 / 2e-173 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 509 / 6e-171 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 447 / 2e-146 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10004686 pacid=23174256 polypeptide=Lus10004686 locus=Lus10004686.g ID=Lus10004686.BGIv1.0 annot-version=v1.0 ATGGCAGCAACCAACATTACTCTGTTTTCTTCTCTGTTCTTACTCACAGTAATCACCCTGATAACAATCAGCTCCCCTGTTTATGGAAGTGCTGATCATG ATCCAAAGTCTTACATTGTGTACATGGGGAAACGCCATGAAGGCGGTGAAGCTGATGCTGTATCTCTTCACTTGAACATGCTTCAAGAAGCCATTGGCAG TGAATTTTCCTCCGAGTCTCTGCTCCATAGCTTCAAGAGAACTTTCAACGGATTTGTAGCTCATCTAACCGATCATCAAGTCTCCAAGATCGCTGCGATG CCTGGAGTGGTATCAGTGTTCCCAAACAGAAACATCAAGCTCTTAACCACAAGATCATGGGACTTTATGGGATTCACTCAGAAATTAGCCCGGAGAGCAT CCTCGGAAAGTGACGTCATCATCGGCGTATTCGACTCCGGGATTTGGCCGGATTCGGAATCCTTCAACGACAGAGGACTCGGCCCTCCGCCGTCCAAATG GAAAGGTGGCTCCTGCCAATTCTCTCCTGAATCTAACTTCACCTGCAACAACAAAATCATTGGCGCGAAATTCTACCGGACCGACAAAACCTTCGGCCCT ACCGACTTTCGGTCCCCGGTGGATTCGAACGGCCACGGGACACACGTCGCCGCCACAGCGGCCGGAGGAGTCGTCGACGGAGCGAGCTTCTACGGGTTCG GGGAAGGGACGGCGCGCGGCGGTGCTCCGTCGGCTAGGATCGCGGTGTACAAAGTGTGCTGGGAGGACACGTGTCGGGCCGCCGACATACTGGCGGCGTT CGAGGACGCCGTGGTGGACGGAGTTGACCTGATTTCTGTGTCACTCGGAGCGTCGGTTTCTAGGGATTTTTTCGAGGATCCGATTGCGATCGGGTCGTTC CACGCGATGAAGGAAGGGATATTGACAGTGGACGCGGCGGGAAACGACGGCGTACAGGGGCTTTACTCGGTGAGGAATTTCTCGCCTTGGTCGCTTACCG TGGCGGCTAGCGCCATTAACCGCCAGTTCTTCGCCCAAGTCCGATTGGGTAACAACTTAACTTTCCAATCTCCTGATTGTAATCAGGGTATCGCAATCAA CACATTTGACATTGGGAGCCGTATGTACCCCATCATCTATGGAGGAGACGCCCCTAATCTCCTTGGCAATTTCACCCGCTCTTTATCCAGGTTATGCGTA AACAACTCACTGGACCCTGAATTAGTAAGAGACAAGATTGTTCTATGTGAGTCGCTCGTCGGAGGAATATTCCCACTTCTCGCCGGAGCGGCGGGTTCCA TTGTAGCAATGAACCGTCCATCTGGAGCACCAGCTGAAAATTTTCCAATGCCGGCTTCAGTTCTAGTGAGGCAAAATTTACCCGCCATTCTATCCTACAT AAGATTCACAAGGAATGCAACCGCAACAATATCGAAGAGTAACACGGGGAAGGACAATCGGAGTCCGTACATCGCCTCATTCTCATCGCGAGGCCCTAAT CCATCCATACCTGACATTCTCAAACCGGACATATCCGCACCAGGAGTGAACATCCTAGCAGCATGGAACCCAAACGTTCGAATCACACCGTACCCAGGCG AAACCAGAACATCCCCTTTCAATTTCCAGTACGGCACATCAATGGCCTGCCCCCACGTCACTGGCGCCGCCGCCTACGTCAAATCCCACCACCCCAATTG GTCCCCTGCCGCCATCAAATCCGCTCTAATGACCACCGCAATCCCCATGAGCTCCTCCAACAACCCCGAAGCCGAATTCGCATACGGGTCCGGCCATCTA AACCCGATCGGAGCCGCCCATCCCGGACTCGTGTACGACGCCGGCGAATCCGACTACGTGGCGCTCTTGTGCGGCCAAGGATACAACACGACCGTCGTTC GGATGATCACAAACGACAATAGCAGCTGTAGTAGTACAAATTCGAATGTTGAGGATTTGAATTACCCTTCTTTTACGGCTTCAGTGGCGGCTTCTGAGAG GTTTAGTCGGGTGTTTAATCGGGTTGTGACGAATGTTGGTAGGAGTAATTCGAGTTATAGAGCGGCGGTGGAGGTGGCGGAGACTGAGGGGGTTAAGGTG AGAGTGAGCCCTGGTGTTTTGGAGTTTGGATTTGTTGGTGAGAGGTTAAAGTTTGAAGTTAGTGTTGAAGGTGTGATTTCGGCGAATTCGACTGTGTCGG GTTCTTTGGTTTGGGATGATGGTGTTCATAAGGTTAGGAGTCTCATTGTGGTGTTTGATTCTGCCTTGTAG
AA sequence Show only first row Show all	>Lus10004686 pacid=23174256 polypeptide=Lus10004686 locus=Lus10004686.g ID=Lus10004686.BGIv1.0 annot-version=v1.0 MAATNITLFSSLFLLTVITLITISSPVYGSADHDPKSYIVYMGKRHEGGEADAVSLHLNMLQEAIGSEFSSESLLHSFKRTFNGFVAHLTDHQVSKIAAM PGVVSVFPNRNIKLLTTRSWDFMGFTQKLARRASSESDVIIGVFDSGIWPDSESFNDRGLGPPPSKWKGGSCQFSPESNFTCNNKIIGAKFYRTDKTFGP TDFRSPVDSNGHGTHVAATAAGGVVDGASFYGFGEGTARGGAPSARIAVYKVCWEDTCRAADILAAFEDAVVDGVDLISVSLGASVSRDFFEDPIAIGSF HAMKEGILTVDAAGNDGVQGLYSVRNFSPWSLTVAASAINRQFFAQVRLGNNLTFQSPDCNQGIAINTFDIGSRMYPIIYGGDAPNLLGNFTRSLSRLCV NNSLDPELVRDKIVLCESLVGGIFPLLAGAAGSIVAMNRPSGAPAENFPMPASVLVRQNLPAILSYIRFTRNATATISKSNTGKDNRSPYIASFSSRGPN PSIPDILKPDISAPGVNILAAWNPNVRITPYPGETRTSPFNFQYGTSMACPHVTGAAAYVKSHHPNWSPAAIKSALMTTAIPMSSSNNPEAEFAYGSGHL NPIGAAHPGLVYDAGESDYVALLCGQGYNTTVVRMITNDNSSCSSTNSNVEDLNYPSFTASVAASERFSRVFNRVVTNVGRSNSSYRAAVEVAETEGVKV RVSPGVLEFGFVGERLKFEVSVEGVISANSTVSGSLVWDDGVHKVRSLIVVFDSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	1.4	0.9897
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	1.4	0.9878
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	3.0	0.9863
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	4.9	0.9796
AT2G15760			Protein of unknown function (D...		Lus10014025 [exp]	6.9	0.9745
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	7.3	0.9827
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	7.7	0.9833
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014708 [exp]	9.5	0.9736
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	9.9	0.9789
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	10.0	0.9768

Compare expression of checked genes

Lus10004686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.