Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02030 208 / 1e-61 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 199 / 3e-58 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT4G34610 176 / 9e-50 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G19700 174 / 4e-49 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT4G36870 165 / 8e-45 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT1G75410 162 / 8e-45 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G16400 160 / 2e-44 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G23760 161 / 7e-44 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G35940 158 / 2e-42 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G27220 150 / 6e-41 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040256 [exp] 608 / 0 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10022599 [exp] 238 / 2e-72 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 232 / 5e-70 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10016110 [exp] 200 / 2e-59 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10021452 [exp] 196 / 9e-58 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10029405 [exp] 166 / 1e-45 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 167 / 2e-45 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 166 / 3e-45 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 165 / 4e-45 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197300 [exp] 291 / 1e-94 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.008G061000 [exp] 282 / 5e-91 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 182 / 3e-51 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.003G131300 [exp] 178 / 7e-50 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G129500 [exp] 172 / 2e-47 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.007G032700 [exp] 172 / 5e-47 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.009G120800 [exp] 170 / 7e-47 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.004G213300 [exp] 171 / 1e-46 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.016G069700 [exp] 169 / 2e-46 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 168 / 3e-46 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10004688 pacid=23174264 polypeptide=Lus10004688 locus=Lus10004688.g ID=Lus10004688.BGIv1.0 annot-version=v1.0 ATGGGAGACAACCCATCAGAAGCTTCCTTCTTCAATTCCTTATCATCAAACCATCCAAGAACCAAACCCAACCCATTCCCTAATCGCCATCACAGTTTCC CAATAACCAGCCCTTCAATCATCATGAACAACAACTCTTCACACTGCAACAATTCTCCTCTCCAACAACAGCAGCAGGGGGCATTATCACTGTCTCTTTC CTTTGCAGCACCAGTAGTCCTCCCTCTTGGACCTTTCACTGGATATGCAACCATCCTCGACACCTCCAGATTCCTCAGACCTGCTCAGCTGATCCTTGAC GACCTCTTCGGGTTCGTAAACTCCCACCCTCCATCCCACCACCACACTCCTGCTGATCATGATCATGATCATGATGAAGAAGAAGCATCCATGTTTGGAA CACAACTTGAAGGTTTTGAACATAGGCGCAAGAATTCCAACCTCATGCTCATGCTTCACGAGGTATACAAAAGGTACAGACTTTACTGCGAGCAGATGAA ATCAGTGGTGGCATCATTTGAAGCAGTAGCTGGGCTTGGAAATGCAGCACCTTTCATCCCGAATGCCATAAAGATCGTCTCTTTCCACTTCACTTCCCTT AAAAATGCACTTCTCCACCAAATCCATTGCTTCAAAGACCAATCAGATTCTGTTTATTCCCAAAGCAACAACAACATCAAACCCTTCTCCACTACTACAT TCAACCTCAAGCAGCATCCTGTGTGGCGATCTCACAAAATGCTCCCTGATCATGCTGTTTCCCTCCTCAAAAGCTGGCTCTTTGAACACTTCCTTCATCC ATATCCTACAGATTCAGAGAAGCAGATTCTAGCTCAGCAGACTGGTTTGTCCAGGACCCAGGTTTCGAATTGGTTTATCAATGCGAGAGTGAGAGTATGG AAGCCAATGGTGGAAGAGATTCACTCACTCGAATCGGAGCAAAAAGCTGCTGTTGCATCCTCGTCCTCTTTGGCGAGTATCGGAAACAAACGGACGAGAT TTTCTTCCGAGCAGGAGGAGGATCACTGTGGTTATTCGTCAAGTGACGGCGTTTCTCTGGCGCTGGCTCTGCCTCCTCGTACACATGTTCCGATAAGTAA TCCTTCGTGGCATTTCCCCGTCAACGCGGCGGCGAATCCAAGCGTCGGGAATCATGAATTCGCCGGCGGCATCAGCAGCAACCAGTTTTATGGCCACCAC TAA
AA sequence Show only first row Show all	>Lus10004688 pacid=23174264 polypeptide=Lus10004688 locus=Lus10004688.g ID=Lus10004688.BGIv1.0 annot-version=v1.0 MGDNPSEASFFNSLSSNHPRTKPNPFPNRHHSFPITSPSIIMNNNSSHCNNSPLQQQQQGALSLSLSFAAPVVLPLGPFTGYATILDTSRFLRPAQLILD DLFGFVNSHPPSHHHTPADHDHDHDEEEASMFGTQLEGFEHRRKNSNLMLMLHEVYKRYRLYCEQMKSVVASFEAVAGLGNAAPFIPNAIKIVSFHFTSL KNALLHQIHCFKDQSDSVYSQSNNNIKPFSTTTFNLKQHPVWRSHKMLPDHAVSLLKSWLFEHFLHPYPTDSEKQILAQQTGLSRTQVSNWFINARVRVW KPMVEEIHSLESEQKAAVASSSSLASIGNKRTRFSSEQEEDHCGYSSSDGVSLALALPPRTHVPISNPSWHFPVNAAANPSVGNHEFAGGISSNQFYGHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	0	1
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	2.0	0.9957
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	2.0	0.9956
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	6.5	0.9924
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	8.2	0.9922
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	8.7	0.9900
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	14.1	0.9950
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	14.7	0.9906
AT1G52190			Major facilitator superfamily ...		Lus10020101 [exp]	15.3	0.9555
					Lus10009719 [exp]	16.5	0.9929
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	17.2	0.9905

Compare expression of checked genes

Lus10004688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.