Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55640 447 / 1e-158 Mitochondrial substrate carrier family protein (.1) AT3G53940 436 / 5e-154 Mitochondrial substrate carrier family protein (.1) AT2G37890 391 / 2e-136 Mitochondrial substrate carrier family protein (.1) AT4G01100 180 / 9e-54 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 165 / 7e-47 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G26180 160 / 3e-46 Mitochondrial substrate carrier family protein (.1) AT5G61810 146 / 5e-41 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G51870 145 / 2e-40 Mitochondrial substrate carrier family protein (.1) AT1G14560 141 / 3e-39 Mitochondrial substrate carrier family protein (.1) AT5G01500 142 / 1e-38 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040257 [exp] 411 / 4e-145 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 402 / 2e-140 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 395 / 6e-138 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 336 / 3e-115 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 256 / 2e-84 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 182 / 1e-54 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 182 / 2e-54 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 181 / 6e-54 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 171 / 2e-50 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197400 [exp] 496 / 3e-178 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 491 / 4e-176 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 452 / 2e-160 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 445 / 8e-158 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 183 / 4e-55 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 181 / 5e-54 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 180 / 7e-54 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 179 / 1e-53 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 165 / 3e-48 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 152 / 2e-43 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10004689 pacid=23174260 polypeptide=Lus10004689 locus=Lus10004689.g ID=Lus10004689.BGIv1.0 annot-version=v1.0 ATGCAGACTGATGCGAGAGTTGGAGTTGTGGTGGAAGGAGGCCCAAGAGGTTTGAATTCAAAACAGCAGCAGCCTGTTCAGCAACATCAGCATCAACAAT CGCAGATCGGAACTATTTCTCAGCTCGTCGCCGGTGGGGTAGCGGGTGCTCTAAGCAAGACATGCACAGCTCCTTTAGCCCGTCTCACCATTCTTTTCCA AATACAAGGGATGCACTCAAATGCTGCATCTTTGAGGAAGGCTAGCATATGGCATGAGGCTTCCCGGATCGTTAGGGAGGAGGGAGTTAGAGCTTTCTGG AAGGGGAATCTTGTTACGATTGCTCATCGTTTGCCTTATTCATCTGTTAATTTCTATGCATATGAGCACTATAAAGAGTTACTGCGTAGGGTACCTGGAC TAGAGAGTCACAAGGAAAGCATAGGTGGAGATGTCTTTGTTCATTTCCTAGGTGGTGGTATGGCTGGGGTAACTGCTGCCACAGTTACATATCCACTAGA CCTTGTAAGAACACGCCTTGCAGCTCAGACAAATGTGATGTACTACAGAGGTATTGGTCATGCTTTGCAGACAATTTGCAAAGAGGAAGGTGTTCGTGGG CTGTATAAAGGTCTTGGAGCCACACTCCTGGGTGTGGGACCGAACATTGCTCTCAGCTTCTCAGTGTATGAAGGCTTACGATCGTTGTGGCAGTCTCATA GACCCGATGATCCCACAGTTGCAGTGAGTTTGGCTTGTGGAAGTCTTTCTGGCATTGCATCCTCAACAGTAACGTTTCCACTTGATCTCGTGAGACGGCG TAAGCAATTGGAAGGAGCAGGCGGGAGGGCCCGTGTTTACACAACAAGCCTTTTCGGGACATTCAAGCAGATACTCAAGACCGAGGGATTGCGGGGACTT TACAGAGGCATTATGCCCGAGTACTACAAAGTTGTTCCTGGTGTCGGCATTTGCTTTATGACCTACGAGACACTGAAGGTGCTTCTAGCTGATCTCAACT CGACAGCATAA
AA sequence Show only first row Show all	>Lus10004689 pacid=23174260 polypeptide=Lus10004689 locus=Lus10004689.g ID=Lus10004689.BGIv1.0 annot-version=v1.0 MQTDARVGVVVEGGPRGLNSKQQQPVQQHQHQQSQIGTISQLVAGGVAGALSKTCTAPLARLTILFQIQGMHSNAASLRKASIWHEASRIVREEGVRAFW KGNLVTIAHRLPYSSVNFYAYEHYKELLRRVPGLESHKESIGGDVFVHFLGGGMAGVTAATVTYPLDLVRTRLAAQTNVMYYRGIGHALQTICKEEGVRG LYKGLGATLLGVGPNIALSFSVYEGLRSLWQSHRPDDPTVAVSLACGSLSGIASSTVTFPLDLVRRRKQLEGAGGRARVYTTSLFGTFKQILKTEGLRGL YRGIMPEYYKVVPGVGICFMTYETLKVLLADLNSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	0	1
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	1.4	0.8630
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	1.4	0.8684
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	4.2	0.8457
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	4.9	0.8115
AT1G01770			unknown protein		Lus10036349 [exp]	7.7	0.8208
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	7.7	0.7948
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	8.1	0.8325
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	8.8	0.8119
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	9.4	0.8347
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	10.4	0.8081

Compare expression of checked genes

Lus10004689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.