Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39830 509 / 6e-177 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT4G36860 402 / 1e-134 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 387 / 2e-129 DA1 DA1 (.1) AT5G66610 255 / 9e-78 DAR7 DA1-related protein 7 (.1.2) AT5G66620 241 / 5e-72 DAR6 DA1-related protein 6 (.1) AT5G66630 232 / 7e-68 DAR5 DA1-related protein 5 (.1) AT5G17890 237 / 1e-67 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 206 / 2e-60 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040258 [exp] 642 / 0 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10022486 [exp] 414 / 4e-140 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 404 / 1e-135 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10018789 [exp] 394 / 2e-132 AT1G19270 575 / 0.0 DA1 (.1) Lus10010033 [exp] 393 / 4e-132 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 389 / 1e-130 AT1G19270 646 / 0.0 DA1 (.1) Lus10032736 [exp] 384 / 2e-128 AT1G19270 628 / 0.0 DA1 (.1) Lus10000138 [exp] 173 / 2e-51 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197500 [exp] 543 / 0 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.014G039900 [exp] 417 / 2e-141 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 414 / 3e-140 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.002G132700 [exp] 413 / 4e-140 AT1G19270 669 / 0.0 DA1 (.1) Potri.007G032500 [exp] 391 / 6e-131 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 390 / 1e-130 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.T124504 [exp] 116 / 1e-28 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 87 / 1e-20 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10004690 pacid=23174262 polypeptide=Lus10004690 locus=Lus10004690.g ID=Lus10004690.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCAATTCCTCCTCAGGCGTCACCCATATCTCCAATCCTTGCGTTTATGACTTGTTTCAAAGCAAAGCAGGGGACTTTGTGGAGAAAAAAT CCAGGCTTTCTAAATGGCTGAGCAAGCTCTTTAAGACTGCTGGAACTCATCGGGATGGCGGCGGAAGCAGTAGCATCGGCGGCAGCCGCCGTCATCCTCA GCTTCTCGGTGAGGAGAACATGCTCTGGCGAGGACCATCAGCTCGATCACTGGATGGCGATCGACCCAGAGCAGCTGATAAAGAAAAAGAAGAGGTTGAT CGTGCCATTGCACTTTCCTTGGCTGAAGACTTGAGAAGACCAAATGTGGACGATGCTGATGTTTTGAACTGGTTTCGAATAGCAGGAAGGTACGGATGGC GCCCTACCACAAGTAATGACGAAGCAGCATTAGCTAGAGCTCAGCAAGACAACCTCAATTTATCTTCTTACCCTCCTCCTTATGCAATTCCTCCTCCCCC ACATTACTACCCAAGAGGATATAGGTTATGTGGCGGCTGCCATCGTGAGATTGGATATGGGAACTATCTGGGATGTATGGGGATGTTCTTCCATCCAGAA TGCTTCAGATGTCATTCTTGTGCCTACCCAATTACTGAAACTGAGTTTTCTTTGTCAGGGAAAGACCCATACCACAAGTCATGTTTCAAAGAGCTTACCC ATCCCAAATGTGAAGTCTGCCTCCAATTTATTCCGATGAACTCAGCCGGTTTGATCGAGTATAGATGCCACCCATTCTGGTCACAGAAGTACTGTCCATG TCACGAGCACGACGGGACAGCTAGATGCTGCAGTTGTGAGAGACTGGAGGTGCTCCATTCTAAGCCATTACGCCACTCGAAACTTCCTTCAACTCATCCA TCGATGTTTGACCCTCTCGGGTTGTTTCTTTTTTCTAGTCTTGGAATGCAAGATACTACTAAATGTCGTCTCTTTGTTGTTCTACTTCTTCATATCCGGA ATCTTCGTTTTGATGCCCATAGTTCTGTTCTCCAGGGATACCATCACATGCCCGAGACTAGAGGACTATGCCTTTCCGAAGAGCAGACCGTCACTAGTGT ACAAAGGAGGCCGAGGATCGGAGGGCACCGGCTTGTCGGAATGAGAACGCAGCCTCAGAAGCTTATCAGAAGATGTGAAGTCACAGCAATTCTCGTCCTC TATGGCCTTCCAAGGCTATTAACCGGGGCCATTCTCGCTCATGAACTGATGCACGGATGGCTACGCCTGAAAGGATACCGGAATCTAAATCCGGAGGTGG AGGAAGGAATCTGCCAAGTGCTATCCTACATGTGGCTCGAATCCGAAGTACTGCCCGGATCCAGAAGTAATAATATGGCATCGACATCAGCGGCATCTTC TTCTTCCTGTTCTTCCTACTCCTCTTCCAAGAAAGGCGGGAGATCCGAGGTCGAAAACAAACTCGGAGAGTTCTTCATGCATCAAATAGCTCACGACGCT TCTCCGGCGTACGGAGGAGGATTCAGGGCTGCTAACAAGGCAGTCAACAAGTACGGCCTCCGTCGGACTCTGGATCACATACGCCTAACTGGGAATTTCC CACTGTAA
AA sequence Show only first row Show all	>Lus10004690 pacid=23174262 polypeptide=Lus10004690 locus=Lus10004690.g ID=Lus10004690.BGIv1.0 annot-version=v1.0 MASSNSSSGVTHISNPCVYDLFQSKAGDFVEKKSRLSKWLSKLFKTAGTHRDGGGSSSIGGSRRHPQLLGEENMLWRGPSARSLDGDRPRAADKEKEEVD RAIALSLAEDLRRPNVDDADVLNWFRIAGRYGWRPTTSNDEAALARAQQDNLNLSSYPPPYAIPPPPHYYPRGYRLCGGCHREIGYGNYLGCMGMFFHPE CFRCHSCAYPITETEFSLSGKDPYHKSCFKELTHPKCEVCLQFIPMNSAGLIEYRCHPFWSQKYCPCHEHDGTARCCSCERLEVLHSKPLRHSKLPSTHP SMFDPLGLFLFSSLGMQDTTKCRLFVVLLLHIRNLRFDAHSSVLQGYHHMPETRGLCLSEEQTVTSVQRRPRIGGHRLVGMRTQPQKLIRRCEVTAILVL YGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPGSRSNNMASTSAASSSSCSSYSSSKKGGRSEVENKLGEFFMHQIAHDA SPAYGGGFRAANKAVNKYGLRRTLDHIRLTGNFPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	1.0	0.9487
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	1.7	0.9274
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	2.4	0.9113
					Lus10022875 [exp]	2.8	0.9180
AT1G67790			unknown protein		Lus10034566 [exp]	4.2	0.9326
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	4.5	0.9116
AT2G32190			unknown protein		Lus10031782 [exp]	5.1	0.8537
					Lus10024951 [exp]	5.5	0.8834
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	5.7	0.9018
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10006193 [exp]	7.7	0.8120

Compare expression of checked genes

Lus10004690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.