Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42710 122 / 1e-32 Ribosomal protein L1p/L10e family (.1) AT3G63490 54 / 2e-08 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036988 [exp] 177 / 1e-53 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10015809 [exp] 145 / 2e-43 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1) Lus10015810 [exp] 128 / 9e-37 AT2G42710 94 / 1e-22 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 106 / 4e-26 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10039589 [exp] 56 / 9e-09 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10005337 [exp] 55 / 1e-08 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143000 [exp] 135 / 1e-37 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1) Potri.001G262400 [exp] 56 / 6e-09 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.009G057100 [exp] 54 / 2e-08 AT3G63490 427 / 3e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10004691 pacid=23174258 polypeptide=Lus10004691 locus=Lus10004691.g ID=Lus10004691.BGIv1.0 annot-version=v1.0 ATGGCAGTGACGAAAGTACTGTTCTTTCAAGCCCGCCGCCTTTGCCCAGCCAGGGTTCCCTTCCACCTCCAGTCCTCTCAGTTTGTGATATTTCGGAGTG GGTTTTCCTCTGATTCAGACCCCGATGGAACTCCATCGCCTGCTCCGAATCCACGAGCTCAACATGTGCTCGTCATGCCAGTTTCCTACGCACCGATGAC GAATGCTCACCCTCCTCCGCAGAAGCAGTTCTCAAGACAGCCGCGGGAAGCCCAGAATTCATCGGAGGCTCGGACGAATTGGATTCGGGAGGACGCCAGG TATGTTCTGAAAGTAGTATTCTTTGCAGAAGGAGCAGAGGCAGAAGAAGCTAGAGCTGCAGGTGCCGACATTGTTGGAGACATCGAACTTATTGAAGAAA TAGCAAGTACCGGCAAGGTGGACTTCGACAAATGTTACACAACTTGTCTGTTGTATACCCGAGTTTCCAAGCAAGGCACTATTGTTAGATACGTGACTCG AGCAGTAAAAGCAGCAAAGCAGAATCAGCTCAAGTATAGAATGGACAAGTCATCCATCGTTCATGTGGGACTTGGAAAGGCAAGTTTCAGCGAAGAGTCC CTACAGGAGAACATCGGTATGGGAGAAGGATACCCAGTTCCAATACAGTCGTTGTCGAAAGCTGTAGATCATTACCACAAAGTGCAGCTCAAGTAA
AA sequence Show only first row Show all	>Lus10004691 pacid=23174258 polypeptide=Lus10004691 locus=Lus10004691.g ID=Lus10004691.BGIv1.0 annot-version=v1.0 MAVTKVLFFQARRLCPARVPFHLQSSQFVIFRSGFSSDSDPDGTPSPAPNPRAQHVLVMPVSYAPMTNAHPPPQKQFSRQPREAQNSSEARTNWIREDAR YVLKVVFFAEGAEAEEARAAGADIVGDIELIEEIASTGKVDFDKCYTTCLLYTRVSKQGTIVRYVTRAVKAAKQNQLKYRMDKSSIVHVGLGKASFSEES LQENIGMGEGYPVPIQSLSKAVDHYHKVQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10004691 [exp]	0	1
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	1.4	0.9277
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	4.9	0.9133
					Lus10027011 [exp]	8.9	0.8777
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	9.8	0.8987
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	13.0	0.9225
AT5G58160			actin binding (.1)		Lus10036612 [exp]	14.7	0.9005
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	14.9	0.9083
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	17.1	0.9204
AT1G30190			unknown protein		Lus10023301 [exp]	20.1	0.9078
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	20.9	0.9163

Compare expression of checked genes

Lus10004691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.