Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05970 646 / 0 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G62020 55 / 2e-07 Coatomer, alpha subunit (.1) AT2G21390 55 / 2e-07 Coatomer, alpha subunit (.1) AT1G11160 50 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 9e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 48 / 3e-05 TAF5 TBP-associated factor 5 (.1) AT5G52820 47 / 4e-05 WD-40 repeat family protein / notchless protein, putative (.1) AT1G61210 47 / 8e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 45 / 0.0001 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040260 [exp] 1111 / 0 AT5G05970 766 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001024 [exp] 854 / 0 AT5G05970 843 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10030162 [exp] 833 / 0 AT5G05970 846 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 50 / 4e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 51 / 5e-06 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 49 / 7e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 49 / 9e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037538 [exp] 48 / 3e-05 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 47 / 6e-05 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060700 [exp] 771 / 0 AT5G05970 862 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G197700 [exp] 753 / 0 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 53 / 3e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 53 / 8e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.012G074800 [exp] 50 / 5e-06 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 50 / 5e-06 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G065200 [exp] 50 / 6e-06 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 50 / 6e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 49 / 1e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G142700 [exp] 48 / 3e-05 AT5G49430 1753 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004693 pacid=23174255 polypeptide=Lus10004693 locus=Lus10004693.g ID=Lus10004693.BGIv1.0 annot-version=v1.0 ATGGCGCTACTCGCCGCAAGCGGCGGCGACACTGTCAAGCTATTCGATGTTTCAGTGGATTCAGGAGACCCCTGCACCTTGACTTACACTCCTTCACCGA CTTTCCTCGTTAACTCGGTCAAGTGGAACCACACCAATTTAGTTGTGGCAAGTGCTGGAGAGGACAAGAAGATATCGCTATGGAGAAGAAATGGTCAGAG CTTGGGCACCATTCCTCTCTTTGGTTCAGATAGTGGAGGCATTGAGGAATCCATATCGGCTATTAACTTTAGTAATAAAGGATCCAGATACATATGCTCT GGTGGAAGTGGTAGAGTTGTAAGAATATGGGATTTACAAAGGAAACTCTGCATTAAACGGTTGATGGGTCATACAAGCACAATAACAGACACTATGTATA ACTGCAAGGATGAGCACTTGGCTTCAATCAGTACAAGTGGGGATCTTATTGTTCACAATCTTGCATCCGGTGGAAAAGCAGCAGAACTAAAGGACCCCTA CAACCAGGTTGTTGAGTTTGTTGAACGGAAGTGCATTTCTTCTGCTGTACTTAGGGTGCTTGATTATTCGCGCATTGGCCGTCACCTCTTGGTTACTGCA GGTGATGATGGATCGGTACATTTATGGGACACTACTGGTCGCCATCCAAAGAATTCTTGGTTGAAGCAACACTCTGCGCCAACAAGTGGCATTAGCTTCT CTCCATCAAGTGACAAGGTTATAGCAAGTATCGGCCTGGACAAAAAATTATATACTTATGATTCTGGATCTAGGCGGTCCTCGTCTGTTATTTCTTATGA GGAACCTTTCTCTTCATTGGCATATCGTGATGATGGATTGGTTCTGGCAGCTGGAACCAGTTCTGGAAGGGTGGTCTTTTATGATGTCCGTGGAAAACCA CAGCCTTACACAGTTCTTCGTGCTTATAGCAGCTCTCAGGCTGTTACAAGTTTATGCTGGCAGAGATCAAAACCAGTTGCTGTAAATGAGAACTGTACTG CAGAGATGGCTCTTCTCGGCGGATCTGTTAAAGATTCTATACTTATGCCTGACCCACTTCCCTCTGTGACATCTTCGAGCTTGTCACTACCCACAACAAT ATCTGGGCCAACCTTTCCAGCTGTCACTTTTGGCGAAGAAACTCGTGGAGCTTTAACGAGATTGAGGGCTCCGCATTCTGGCTATAATTTTGAGGATGAT ATGGGGGTATTCTCTCCACTTGTGGAGGTTCAGCCAATTACACCTTCCCTTGATAAGCTATGGGATATTCACGAGGGTTCTAAAGTAGATAACCTATTAG TTGTACCTGATTTATATACGTTTCGGCTGTCTGCCCTCTATAAACAGGATGACACCCGATCTTCAAGAAGTGTGGACACCTCAATAATGCCTCCAGAAGC TTGGGGCGGTGAGAGATTGGATACAATTGCACACCTTCGCCAGGCGTCCAACTTTCCACACCGTCTTGTGATGTCAACTTCCGGAAGTTTCACTTCAGGG TCTATGCTTCAAACAAGTATGAGTCCGTTAACTACAAGTTTCTTAAATGCAGGAGCCAGAGACGTTTCTTCTGGTCAGGACTCTCCAATTGCGGGAGTGG CTAACACCGTAGCATCGGCAGGGCTGGCATCATCATCATCAACTTTTGCCCGTAGATATTCAACCTACGCAGAAAGAATTGGCACAGCACATTTCAGTGA TGGGACATCATCCCTTGGCGTTGCTTCGCCCAAAGTGAAGAAGACGGGATCTGAAACCAAGGAAGAACTCTTGAACAGCCTCTTGTCGAGGTCTGACAGT ATGGCTGCCGCTGAACCGGGAGTTCTTCCGGTTGCAAATGTAAGGAGACCAAACAGAAAAACTGACTGGTTTTTTTCCTCATTTCTCAATACTCTAATTT GGAAGTCGAATTTGTCGCAGGGAGTGATAGCGCAACCGGTGCACAAGGTTGTTCAGCCTGATATAATACAGCCGAAACAAGGGGGTTCCTCTTCCTTCCC TCTCCAGATATTTCAACGTACCCTGGAACAAACTCTGGGTTCTTTCCGGGACTCGATACGCGAAGACATGAGGAACCTTCACATTGAAGTCCTGAGACAA TTTCATATGCAGGAGGTAACCACATTGGTGATCAGAAATTTCATGATTGCATCATTTTGGTATTCGAGAGTTTTGATATTGTGGAGATGGTGTATACAGA GCATGTATCTGGAGAACCAAGCAGAGATGTTGAACAAAATCGAGTCCCTCGAGAAGCAAAACTGGGAGGTTAGACAATTAAGACGATAG
AA sequence Show only first row Show all	>Lus10004693 pacid=23174255 polypeptide=Lus10004693 locus=Lus10004693.g ID=Lus10004693.BGIv1.0 annot-version=v1.0 MALLAASGGDTVKLFDVSVDSGDPCTLTYTPSPTFLVNSVKWNHTNLVVASAGEDKKISLWRRNGQSLGTIPLFGSDSGGIEESISAINFSNKGSRYICS GGSGRVVRIWDLQRKLCIKRLMGHTSTITDTMYNCKDEHLASISTSGDLIVHNLASGGKAAELKDPYNQVVEFVERKCISSAVLRVLDYSRIGRHLLVTA GDDGSVHLWDTTGRHPKNSWLKQHSAPTSGISFSPSSDKVIASIGLDKKLYTYDSGSRRSSSVISYEEPFSSLAYRDDGLVLAAGTSSGRVVFYDVRGKP QPYTVLRAYSSSQAVTSLCWQRSKPVAVNENCTAEMALLGGSVKDSILMPDPLPSVTSSSLSLPTTISGPTFPAVTFGEETRGALTRLRAPHSGYNFEDD MGVFSPLVEVQPITPSLDKLWDIHEGSKVDNLLVVPDLYTFRLSALYKQDDTRSSRSVDTSIMPPEAWGGERLDTIAHLRQASNFPHRLVMSTSGSFTSG SMLQTSMSPLTTSFLNAGARDVSSGQDSPIAGVANTVASAGLASSSSTFARRYSTYAERIGTAHFSDGTSSLGVASPKVKKTGSETKEELLNSLLSRSDS MAAAEPGVLPVANVRRPNRKTDWFFSSFLNTLIWKSNLSQGVIAQPVHKVVQPDIIQPKQGGSSSFPLQIFQRTLEQTLGSFRDSIREDMRNLHIEVLRQ FHMQEVTTLVIRNFMIASFWYSRVLILWRWCIQSMYLENQAEMLNKIESLEKQNWEVRQLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	0	1
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	3.5	0.7926
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	3.9	0.8184
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	5.0	0.7892
AT2G26270			unknown protein		Lus10009795 [exp]	8.7	0.7469
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	16.0	0.7496
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	19.1	0.7984
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	19.4	0.7431
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	21.8	0.7906
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	24.0	0.7825
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	25.6	0.7744

Compare expression of checked genes

Lus10004693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.