Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05980 637 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 534 / 0 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT3G10160 500 / 1e-171 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT5G41480 112 / 2e-26 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040261 [exp] 949 / 0 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10030161 [exp] 759 / 0 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 665 / 0 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10014939 [exp] 105 / 8e-24 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10038824 [exp] 103 / 5e-23 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060600 [exp] 704 / 0 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 684 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.016G041800 [exp] 506 / 6e-174 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.006G045400 [exp] 506 / 3e-173 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.015G022400 [exp] 103 / 3e-23 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10004694 pacid=23174251 polypeptide=Lus10004694 locus=Lus10004694.g ID=Lus10004694.BGIv1.0 annot-version=v1.0 ATGTCAGGCGCCAACTATGCTTTAGCTGATGTTGAGCTTCGTGCTCGTGATCCCGCAGGCGACGATGAATCTTCCCGTGCTCTCACGCGGTACGACGAGG CGATGGACGCTTTGTCCTCTTTGATAACGAAGCGGAGTCGTGCTGATAAGAGCAACAAAGGAGATCAATTCGATCTACTCTTTGATTATCTGAAGATGCT GGAGCTGGAGGATGGATTGGCAGATATGAAGATTGTTCACGTGGCTGGTACTAAAGGGAAGGGATCCACATGCACATTCACGGAGTCTATACTTCGGAAT TGTGGTTTTCGAACTGGGCTTTTCACATCTCCTCACCTCATTGACATCAGAGAACGGTTTCGATTAGATGGCGTTGATATCTCCGAGGAGAAGTTCTTGG CCTATTTCTGGTGGTGTTTCAACCGATTAAAGGAAATGACGACAGAAGATGTACCAATGCCTCCTTTGTTTCGTTTTCTTGCATTGCTTGCCTTCAAGAT CTTTGCAGCAGAGCAGGTAGAAGTTGCTATTTTGGAGGTTGGATTAGGGGGCAAGTTCGATGCAACAAATGTGGTTCAGAAACCTGTTGTATGTGGCATA ACTTCCCTTGGGTATGACCATACGGAGATTCTTGGGAACACCCTCGGAGCAATTGCTGGTGAAAAAGCTGGTATTTTAAAGCATGGTGTTCCTGCATTTA CAGTGCAGCAACCTGAGGAAGCCATGCATGTCCTCGAAGAAAAAGCTTCCAGTTTACATGTAGATCTTCAAATTGTGCAACCGTTGGATGTCAATTTGCT AAATGGCCTAAAACTTGGACTTGACGGAGACCACCAATATGTCAATGCTGGTCTTGCCACTGCACTTTCTTTCAGTTGGCTAAAGAGGACAGGTCATCTG GAACTTGCCAGCCAGGAACACGCTGGATCGCTACCGGAGCCTTTTGTTAAGGGGTTAACAACAGCTAGGTTTCAAGGCCGGGCTCAAATTGTCCCTGACG AATATGTAGAGAGTGAAAGTGACGGGGATCTCGTCTTTTATTTGGATGGCGCCCACAGCCCCGAAAGCATGGAAATATGTGCAAAATGGTTTTCTGGTGC TGTAAAAGGCGAAAGCGAACATGATACAGTCACATCGCCAGAGAGTTCTTCCAAGCATCAATTGGAGAACAATACAGTGCAGATACTCTTATTCAATTGC ATGACGGTGCGTGATCCTCAGCTGCTTCTTCCACCGTTAATAAAGACATGTACTAGTCAAGGTGTCAACTTCAAGAAGGCACTCTTTGTACCCAATACCT CGGTGTATCATAAGGTCGGATCTCATGCTTCACCATCAACTGATCCTGAAGTTGACTTGTCATGGCAGTTTACTCTTCAAAGAGTGTGGGAAACCATCGT TCAGAATGATAAAGGAAGCAACGCAAGAGATGTGGAACCTGTCTCAGAGGAAAATGGCGATTCTGAAACAAATGCTGAGAGTTGTGAGAGCAGTGAAGTC TTTCCTTCTCTCCCTTTGGCTATCAAATGGCTTAGGGACAGTGTCCGACAGAATCCATCTGTTTGTTTCCAGGTGATCTACTCGGACTCAAGATTGGATA TTACTGAAAATGGTTATCTGAAGATTGTGAACTCCTTTCTGTGTCAGATCATAAGCTATGCTCCTTAA
AA sequence Show only first row Show all	>Lus10004694 pacid=23174251 polypeptide=Lus10004694 locus=Lus10004694.g ID=Lus10004694.BGIv1.0 annot-version=v1.0 MSGANYALADVELRARDPAGDDESSRALTRYDEAMDALSSLITKRSRADKSNKGDQFDLLFDYLKMLELEDGLADMKIVHVAGTKGKGSTCTFTESILRN CGFRTGLFTSPHLIDIRERFRLDGVDISEEKFLAYFWWCFNRLKEMTTEDVPMPPLFRFLALLAFKIFAAEQVEVAILEVGLGGKFDATNVVQKPVVCGI TSLGYDHTEILGNTLGAIAGEKAGILKHGVPAFTVQQPEEAMHVLEEKASSLHVDLQIVQPLDVNLLNGLKLGLDGDHQYVNAGLATALSFSWLKRTGHL ELASQEHAGSLPEPFVKGLTTARFQGRAQIVPDEYVESESDGDLVFYLDGAHSPESMEICAKWFSGAVKGESEHDTVTSPESSSKHQLENNTVQILLFNC MTVRDPQLLLPPLIKTCTSQGVNFKKALFVPNTSVYHKVGSHASPSTDPEVDLSWQFTLQRVWETIVQNDKGSNARDVEPVSEENGDSETNAESCESSEV FPSLPLAIKWLRDSVRQNPSVCFQVIYSDSRLDITENGYLKIVNSFLCQIISYAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	0	1
AT1G36990			unknown protein		Lus10028037 [exp]	4.9	0.8723
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	5.7	0.8590
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	8.1	0.8690
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	13.4	0.8401
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	16.4	0.8707
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	18.1	0.8663
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	26.8	0.8642
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	27.5	0.8621
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	27.9	0.8704
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	33.0	0.8455

Compare expression of checked genes

Lus10004694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.