Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39805 322 / 1e-111 Integral membrane Yip1 family protein (.1.2) AT5G27490 165 / 7e-50 Integral membrane Yip1 family protein (.1) AT3G05280 147 / 5e-43 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001020 [exp] 367 / 2e-128 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 313 / 5e-108 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2) Lus10004473 [exp] 164 / 2e-49 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 161 / 2e-48 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 150 / 4e-44 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 149 / 7e-44 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060300 [exp] 347 / 2e-121 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 328 / 3e-114 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2) Potri.005G033900 [exp] 159 / 2e-47 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 143 / 2e-41 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10004695 pacid=23174267 polypeptide=Lus10004695 locus=Lus10004695.g ID=Lus10004695.BGIv1.0 annot-version=v1.0 ATGAAACGGAATGCAGTGACTGAAGCAAGCATGCACACGTTTCCTCCAGCTAGTAATGTACGGGGAGGCGGTGGTGGAGGCAGCAGCAGCAGCAACAGGG GTTATCAGACTATGGGAGATCCGGCGGAGGGAGTTGAACAACAAACATCACCGAACAGTTGGAAAGGAGTATTTAGTGTGTCATCATATACACAGTACTT CAATGTTGACACAGACATTGTCATGAACAGATTGATGAGCTCGTTCTATCCTATAGGCGGGGATTTTTTCAGTAAGATCCATGCAAATCCAGACTTATAT GGACTTGTATGGATATCAACAACGTTGGTATTCCTCCTCGCCTCTCTAGGGAATTGTGCTACCTATCTCATGCTGAAACGGACTGACAGCAGTGCGTCAT GGAGCTTTGACGTGGGATATGTAAATACAGCGACAATGTTGATCTTTGGCTATGTGATCATTGTACCATTGGGATTTTACTTCCTGCTTCAGTATCTCGG ATCTAATGCAAGCTTGATTCGTTTTTGGTGCATGTGGGGATACTCTCTTTTCATCTTTGTCCTATCTTCTGTACCGTTGCTCATCCCTATTGAGTTTCTA CGTTGGTTAATCATACTTGCCGCTGGTGTTGAATCGGCCTGCTTCGTGACAGCTAACCTCAAGACTTTTGTTGAAGGAGGTGATCTCAACATAGTGCTGG TAGCTTCGTTCCTGCTACAACTGGCTTTGGCAATCTTCATCAAGGTCTGGTTCTTCCCCTGA
AA sequence Show only first row Show all	>Lus10004695 pacid=23174267 polypeptide=Lus10004695 locus=Lus10004695.g ID=Lus10004695.BGIv1.0 annot-version=v1.0 MKRNAVTEASMHTFPPASNVRGGGGGGSSSSNRGYQTMGDPAEGVEQQTSPNSWKGVFSVSSYTQYFNVDTDIVMNRLMSSFYPIGGDFFSKIHANPDLY GLVWISTTLVFLLASLGNCATYLMLKRTDSSASWSFDVGYVNTATMLIFGYVIIVPLGFYFLLQYLGSNASLIRFWCMWGYSLFIFVLSSVPLLIPIEFL RWLIILAAGVESACFVTANLKTFVEGGDLNIVLVASFLLQLALAIFIKVWFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39805			Integral membrane Yip1 family ...		Lus10004695 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	3.6	0.9142
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	7.5	0.9065
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	7.7	0.9130
AT2G42700			unknown protein		Lus10033605 [exp]	15.5	0.8537
AT4G33740			unknown protein		Lus10020507 [exp]	17.7	0.9035
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	20.5	0.8791
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	21.4	0.8825
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	21.5	0.8779
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	24.0	0.8771
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	26.7	0.8936

Compare expression of checked genes

Lus10004695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.