Plant FIBer expression Database

Lus10004696 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39800 438 / 3e-148 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
AT3G55610 435 / 6e-148 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040262
[exp]
711 / 0 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001019
[exp]
511 / 0 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10030158
[exp]
514 / 1e-177 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040263
[exp]
484 / 1e-167 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G198400
[exp]
483 / 1e-165 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Potri.008G060200
[exp]
457 / 2e-155 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00696 AA_kinase Amino acid kinase family
Representative CDS sequence
>Lus10004696 pacid=23174275 polypeptide=Lus10004696 locus=Lus10004696.g ID=Lus10004696.BGIv1.0 annot-version=v1.0
ATGAACGGCTACGCCCCCGAAAGCTCCAGAGCTTTCGTCAAGGACGTCAAGCGTATTGTCATCAAGGTTGGGACTGCTGTTGTCACTAGAGGCGATGGGA
GATTGGCGCTTGGGAGATTGGGAGCTCTCTGTGAGCAGATTAAAGAGCTGAATTACCAGCATTTTGAAGTGATTATGGTTACGTCTGGTGCTGTTGGCCT
CGGCCGCCAAAGGCTCAGATATCGCAAGTTAGTCAACAGCAGCTTTGCTGATCTCCAGAAGCCACCCGGTGATCTGGACGGGAAGGGGTGTGCTGCTGTT
GGACAGAACAGTATCATGGCCCTTTATGACACCTTGTTCAGTCAGCTGGATGTGACTTCTGCTCAGATTCTCGTGACTGATAATGATTTTAGAGATAAAG
ATCTCAGGACTCAACTTCAGCAGACTGTTGACTCGCTGCTCAACCTCAGGGTTGTTCCCATTTTCAACGAGAATGATGCAGTCAGTACCCGGAAAGCCCC
ATATGAGGCATGCAACCTTTTGCCTTCTTTCCAGTTTCCTCCAACTTGTTTGTGTTACATTTCTGTGGATTCCTCTGGTATCTTTTGGGACAATGACAGC
TTGGCTGCCTTGCTGGCATTGGAGTTGAACGCTGATCTTCTTGTTCTGCTGAGTGACGTGGACGGTCTTTACAGTGGTCCACCGAGTGACCCGAAGTCAA
AGTTGATTCATACATACATTAAGGAAGTGCATCAAGGTGGAATCACGTTTGGGGACAAATCCAGGGTGGGAAGAGGCGGAATGACAGCAAAAGTTAAAGC
TGCTGTCAATGCTGCTAATGCAGGTGTTCCTGTTATCATAACCAGCGGATTTGCTCTCCAGAACATAATTAAAGTCCTCCATGGAGATGATATTGGCACT
CTGTTTCACCGGGATGCTCACTCATGGGTCAGAACCAAAGAAACGGGAGCCCGTGACATGGCTGTTGCAGCAAGGGAGTGTTCTAGGCGTCTGCAGGCAC
TATCTTCAGAAGAGAGGAACAAGATATTGCTGGATATAGCAGATGCCCTCGAAGCCAATGAAAAAGTAATTAAGGTTGAGAATGATGCAGATCTTGCTGC
TGCTGAGCAGGAAGGATTAGAAAGCTCCTTGTTAGCACGGTTGGCACTGAAGCCCGGGAAGGCAAGATACCCTTGTGCTGTTGCTCTGTTACCAATTTAT
GTCTTTATTTCTTGTGACTCTCCGGACAGTGTAACTGCTTTCTGGCTTTATGACGCAACAGCATTGCTGGCAATGATGATATCCGTTTCTGATCCTATTT
ATGCTAACCTCCCAGATTACAAGTCTTGCTAA
AA sequence
>Lus10004696 pacid=23174275 polypeptide=Lus10004696 locus=Lus10004696.g ID=Lus10004696.BGIv1.0 annot-version=v1.0
MNGYAPESSRAFVKDVKRIVIKVGTAVVTRGDGRLALGRLGALCEQIKELNYQHFEVIMVTSGAVGLGRQRLRYRKLVNSSFADLQKPPGDLDGKGCAAV
GQNSIMALYDTLFSQLDVTSAQILVTDNDFRDKDLRTQLQQTVDSLLNLRVVPIFNENDAVSTRKAPYEACNLLPSFQFPPTCLCYISVDSSGIFWDNDS
LAALLALELNADLLVLLSDVDGLYSGPPSDPKSKLIHTYIKEVHQGGITFGDKSRVGRGGMTAKVKAAVNAANAGVPVIITSGFALQNIIKVLHGDDIGT
LFHRDAHSWVRTKETGARDMAVAARECSRRLQALSSEERNKILLDIADALEANEKVIKVENDADLAAAEQEGLESSLLARLALKPGKARYPCAVALLPIY
VFISCDSPDSVTAFWLYDATALLAMMISVSDPIYANLPDYKSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10004696
[exp]
0 1
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10040262
[exp]
1.0 0.9613
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10040263
[exp]
2.4 0.8792
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10004697
[exp]
4.2 0.8078
AT4G35130 Tetratricopeptide repeat (TPR)... Lus10003233
[exp]
6.9 0.8213
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10004633
[exp]
9.8 0.8272
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10006360
[exp]
13.0 0.8192
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Lus10005762
[exp]
15.5 0.8130
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10017566
[exp]
18.1 0.7662
Lus10007677
[exp]
18.4 0.7925
AT4G31970 CYP82C2, JAH1 "cytochrome P450, family 82, s... Lus10038201
[exp]
18.5 0.7811

Lus10004696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.