Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 487 / 3e-169 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 481 / 2e-168 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040264 [exp] 547 / 0 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 545 / 0 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10030158 [exp] 524 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001018 [exp] 512 / 0 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001016 [exp] 442 / 2e-157 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10005468 [exp] 153 / 3e-45 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 496 / 4e-173 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 485 / 2e-168 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004697 pacid=23174281 polypeptide=Lus10004697 locus=Lus10004697.g ID=Lus10004697.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAGTTGGCCATGTATTGAAGAAAACTGAACTTGCAGATGGTCTTGTGTTAGAAAAGACATCTTCTCCTCTAGGTGTTCTACTGATTGTGT TTGAGGCTCGGCCTGATGCACTAGTGCAGATAGCTTCATTGGCGATACGCAGTGGAAACGGTCTCTTACTGAAAGGGGGGAAGGAGGCCAAGCGATCGAA TGCAATTTTGCATAAGGTAATCACTGATGCTATTCCAAACAATGTTGGGAGAAAGCTTATTGGACTGGTGACCTCAAGAGAAGAAATTCCTAACCTGCTT AAGCTTGATGATGTGATCGATCTTGTGATTCCTAGAGGCAGCAACAAGCTGGTTTCCACTATCAAAGCATCAACCAAAATCCCTGTTCTGGGTCACGCTG ATGGAATTTGTCATATATATGTCGACAAGTCTGCTAAAATGGACACGGCCAAGCGTATTGTGGTAGATGCGAAAGTGGACTATCCAGCAGCCTGTAATGC AATGGAAACTCTTCTGGTGCATAAGGATTTGCTTCCCACTCGTGCTCTGAATGAGCTAATAGTCGATCTTGGAAGTGAAGGTGTGATTGTATATGGCGGG CCAAGGGCAAGCAAGGAGCTGAACATTCCGGAGACAGCATCGTTCCATCACGATGCACATACTGATTGCATCATTGCAGAAGACCCTGAAGTAGCAGAGA CTTTTTTACGACAAGTTGACAGTGCTGCTGTTTTCCACAATGCAAGTACAAGATTCTGCGATGGAGCAAGATTCGGACTTGGTGCAGAGGTGGGAATCAG TACAAGTAGAATCCACGCTCGAGGCCCCGTAGGAGTCGAAGGATTTTTGACAACCCGATGGAAACTGAGAGGCAGTGGGCAAGTAGTGGATGGAGATAGG GGAGTGACCTACACCCACAAGGATATAGCTGTATAG
AA sequence Show only first row Show all	>Lus10004697 pacid=23174281 polypeptide=Lus10004697 locus=Lus10004697.g ID=Lus10004697.BGIv1.0 annot-version=v1.0 MEDPVGHVLKKTELADGLVLEKTSSPLGVLLIVFEARPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITDAIPNNVGRKLIGLVTSREEIPNLL KLDDVIDLVIPRGSNKLVSTIKASTKIPVLGHADGICHIYVDKSAKMDTAKRIVVDAKVDYPAACNAMETLLVHKDLLPTRALNELIVDLGSEGVIVYGG PRASKELNIPETASFHHDAHTDCIIAEDPEVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGFLTTRWKLRGSGQVVDGDR GVTYTHKDIAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	0	1
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	1.0	0.9572
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	4.2	0.8078
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	4.6	0.8031
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	7.2	0.7856
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	13.0	0.7563
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	17.4	0.7447
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	22.3	0.7457
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	23.1	0.7213
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	26.7	0.7407
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	28.2	0.7546

Compare expression of checked genes

Lus10004697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.