Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53850 198 / 4e-66 Uncharacterised protein family (UPF0497) (.1) AT5G02060 181 / 4e-59 Uncharacterised protein family (UPF0497) (.1) AT3G23200 160 / 2e-51 Uncharacterised protein family (UPF0497) (.1) AT2G28370 117 / 4e-34 Uncharacterised protein family (UPF0497) (.1) AT2G37200 95 / 5e-25 Uncharacterised protein family (UPF0497) (.1) AT3G50810 71 / 4e-16 Uncharacterised protein family (UPF0497) (.1) AT1G49405 68 / 5e-15 Uncharacterised protein family (UPF0497) (.1) AT4G37235 64 / 2e-13 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040264 [exp] 278 / 7e-93 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10010881 [exp] 142 / 3e-44 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 141 / 3e-44 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10022188 [exp] 133 / 1e-40 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 119 / 1e-34 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 119 / 1e-34 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 120 / 9e-33 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021469 [exp] 111 / 2e-31 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 111 / 3e-31 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198700 [exp] 244 / 2e-84 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 206 / 2e-69 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 145 / 2e-45 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 142 / 4e-44 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 115 / 6e-33 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 110 / 5e-31 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 107 / 5e-30 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 100 / 3e-27 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 98 / 1e-26 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 52 / 4e-09 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10004698 pacid=23174269 polypeptide=Lus10004698 locus=Lus10004698.g ID=Lus10004698.BGIv1.0 annot-version=v1.0 ATGAAGGATTTGTTTGGGAGTCCAGGGCGGGTGAGTGGGTTAGGATTGAGGGTAGGGCAGTTTGTGTTTGCAGCTGCTTCGATTGGAGTTATGGTTTCTG CTCATGGCTTCTTCAACTCTACTGCCTTCTGCTATTTAATTGCATCGATGGGCCTTCAAGTGCTTTGGAGTTTCGGACTTGCATGCCTCGACCTCCATGC ATTGAGATTAAAGAGAAGCCTGCAGAATCCCGTCTTAGTGAGCCTATTCGTTGTTGGTGATTGGGTGACATCAATCCTCTCACTTGCAGCTGCATCTGCA TCAGCAGGAGTTATAGTTTTGTACGCTAGAGACCTGCATTACTGCAAGTCCGAGATTCATTTCCCGTGCCAGAAGTTCCAAATCTCCATTAGTTTGGCAT TTATCTCATGGTTTCTCGTTGCAGTTTCATCCCATGTCATGTTCTGGCTCATGGCCTCACTATGA
AA sequence Show only first row Show all	>Lus10004698 pacid=23174269 polypeptide=Lus10004698 locus=Lus10004698.g ID=Lus10004698.BGIv1.0 annot-version=v1.0 MKDLFGSPGRVSGLGLRVGQFVFAAASIGVMVSAHGFFNSTAFCYLIASMGLQVLWSFGLACLDLHALRLKRSLQNPVLVSLFVVGDWVTSILSLAAASA SAGVIVLYARDLHYCKSEIHFPCQKFQISISLAFISWFLVAVSSHVMFWLMASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53850			Uncharacterised protein family...		Lus10004698 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	3.5	0.8808
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	15.4	0.8669
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	21.0	0.8586
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001781 [exp]	21.7	0.8582
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	24.2	0.8046
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	24.2	0.8566
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	34.1	0.8569
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10018285 [exp]	41.0	0.8212
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	42.3	0.8489
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	44.5	0.8502

Compare expression of checked genes

Lus10004698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.