Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 645 / 0 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 608 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 488 / 2e-174 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 191 / 5e-57 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 189 / 1e-56 ADP-glucose pyrophosphorylase family protein (.1) AT2G34970 55 / 5e-08 Trimeric LpxA-like enzyme (.1) AT3G02270 50 / 2e-06 Trimeric LpxA-like enzyme (.1) AT5G19485 44 / 9e-05 transferases;nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040265 [exp] 699 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 639 / 0 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 517 / 0 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 469 / 6e-167 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 244 / 4e-81 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10042942 [exp] 184 / 2e-54 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 182 / 9e-54 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 167 / 3e-50 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10039916 [exp] 117 / 1e-30 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198800 [exp] 656 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 655 / 0 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 647 / 0 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 567 / 0 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 197 / 1e-59 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 182 / 1e-53 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 55 / 5e-08 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 43 / 0.0003 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 42 / 0.0006 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10004699 pacid=23174263 polypeptide=Lus10004699 locus=Lus10004699.g ID=Lus10004699.BGIv1.0 annot-version=v1.0 ATGAAGGCATTGATCCTTGTTGGAGGGTTCGGGACACGCTTGAGGCCATTGACCCTCAGTGTTCCTAAGCCTCTTGTTGATTTTGCAAACAAACCAATGA TCCTGCATCAGATCGAGGCTCTTAAGGCGATTGGGGTGACTGAGGTGGTTTTGGCTATCAACTACCAGCCAGAAGTGATGATGAACTTCCTGAAGGAATT CGAGGCGAAGCTTGGTATTAAGATCACATGCTCGCAGGAGACTGAGCCACTCGGGACTGCTGGTCCTTTGGCCCTTGCTAGGGACAAGCTTATGGATAAG TCCGGTGCACCGTTCTTCGTTCTCAACAGTGATGTCATCAGCGACTACCCTCTTAAGGAAATGATAGAGTTTCACAAATCTCATGGAGGAGAAGCTTCTA TTATGGTGACCAAGGTTGATGAGCCATCAAAATACGGAGTGGTGGTTATGGAGGAATCCACAGGGCAGGTTGATAAATTCGTAGAGAAGCCAAAGATATT CGTGGGGAACAAAATCAACGCTGGAATCTATCTACTGAACCCTTCGGTTCTGGACCGAATTCAGCTGAGACCCACCTCAATCGAGAAAGAGGTGTTCCCC CAGATAGCTGCAGACAAGAAACTCTTCGCAATGGTCCTCCCTGGGTTCTGGATGGACATCGGACAGCCTCGAGACTACATTACAGGGTTGAGACTTTATC TCGATTCCCTGAGGAAGAAATCCTCATCCAAGCTGGCCACGGGATCTCATATAGTCGGCAATGTTTTGGTGGACGAGACAGCCAAGATCGGCGAAGGATG TTTGATCGGTCCTGATGTAGCGATAGGACCGGGATGCATCGTCGAATCGGGGGTTAGACTGTCTCGTTGCACTGTGATGCGTGGAGTTCGTGTCAAGAAG CATGCTTGCATTTCCAGCAGCATCATCGGCTGGCACTCGACAGTTGGCCAGTGGGCCCGCGTCGAGAACATGACGATCCTCGGCGAGGATGTACATGTTT GCGACGAGATTTACAGCAACGGCGGTGTTGTGCTCCCCCACAAGGAGATCAAGTCGAGCATCTTGAAGCCGGAGATAGTGATGTGA
AA sequence Show only first row Show all	>Lus10004699 pacid=23174263 polypeptide=Lus10004699 locus=Lus10004699.g ID=Lus10004699.BGIv1.0 annot-version=v1.0 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMMNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLMDK SGAPFFVLNSDVISDYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKFVEKPKIFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEVFP QIAADKKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSSKLATGSHIVGNVLVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRVKK HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	1.0	0.9511
AT3G49720			unknown protein		Lus10007228 [exp]	1.7	0.9381
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	2.4	0.9485
AT2G46640			unknown protein		Lus10030218 [exp]	3.2	0.9288
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	9.8	0.9276
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	11.0	0.9045
AT3G11590			unknown protein		Lus10013311 [exp]	17.5	0.9194
AT3G17120			unknown protein		Lus10037790 [exp]	21.5	0.8943
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	21.8	0.8934
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	26.0	0.8903

Compare expression of checked genes

Lus10004699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.