Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55580 542 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G53830 486 / 1e-169 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 131 / 1e-33 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 100 / 4e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 100 / 4e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 96 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 95 / 5e-21 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT4G14368 95 / 2e-20 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 94 / 4e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 91 / 5e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040266 [exp] 811 / 0 AT3G55580 588 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 127 / 7e-32 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 122 / 3e-30 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 101 / 2e-22 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 101 / 2e-22 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 100 / 4e-22 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036737 [exp] 100 / 5e-22 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10035957 [exp] 98 / 6e-22 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 96 / 1e-20 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199100 [exp] 632 / 0 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G059800 [exp] 627 / 0 AT3G55580 566 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.016G101700 [exp] 492 / 4e-172 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.006G089901 [exp] 129 / 6e-36 AT3G53830 129 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 131 / 2e-33 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.T124906 [exp] 114 / 7e-27 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 114 / 7e-27 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 106 / 4e-24 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 106 / 4e-24 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 105 / 6e-24 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10004700 pacid=23174270 polypeptide=Lus10004700 locus=Lus10004700.g ID=Lus10004700.BGIv1.0 annot-version=v1.0 ATGAACGGAGAAGGAAGAGCGGGTTCAGCAGTGAGGGAGGACAAATTGGTAGTGCTCATGTCCGGCTACCTTCCTGGAGCTCTGCCTCAGAGATCGCCGA TTTCGTCGCCGGTCGTTGTTAGGTCTGACGGATTCGGCTGGAAGGATGTTTGCGGCGGCGGGTGTGGTTTCGCAATGGCCATTTCTGATTCTGGGAATCT CATTACCTGGGGTTCAACGGACGATCTTGGTCAAAGCTACTTAACTTCTGGAAAACATGGGGAAATTCCTGAGCCTTTCCCTCTTCCAACTGGTGCTACC CTAACAAAAGCTGCAGCAGGCTGGGCTCATTGTGTAGCCTCTACAGACATTGGGGAAGTGTATACTTGGGGATGGAAAGAGTGCATTCCTTCGGGGAAAA TATTCGGAGAGCCATCAACCCCCAGAGTTTCGGAAAATGATCTTTCTGAAAGACATGGTCAGCTTGCGTTGGAACAAGTGAGCCCTGGTCCTCAAGTCGC AAAATCCAGTGGTGATACTAAAGGGGTGGATGAAAGTAAGAAGAGGAGGCGATTATCGGCTAAACAGACAGCTGAAAGTTCATCTTCCGGGGACGATTTA CAATCAGCACTTCCTTGTTTGGTTACATTAAACCCAGGAGTGAGGATTGTCAGTGTAGCTGCTGGAGGCCGCCACACTTTGGCTCTTTCAGATATAGGAC AGGTATGGGGATGGGGGTATGGAGGTGAAGGCCAGCTTGGCTTGGGCTCCAGGATTCGGATGGTGTCTTCTCCTCATCCTATTCCTTGTATAGAATCTTC TCACGGTAGAGATAGACCTGCAGCAACTTCTCGAGGCACAATTTCGGAGGGCCAAAGTTCTCGAAATTTCGGAAATTATATTAAGGAAATAGCTTGTGGA GGCCGGCACAGTGTTGCTATCACGGATGCTGGAGCTATACTCGCATTTGGCTGGGGACTCTATGGGCAGTGTGGACAAGGTAGTACAGATGACGAGTTGA GTCCAACTTGCGTATCTTCATTGCTGGGAATTCGAATAGCAGCAGTTGCTGCAGGGTTATGGCATACTGTTTGCATATCAGATGATGGCGATGTTTATGC ATTCGGTGGGAATCAGTTTGGCCAGCTCGGAACTGGCGCTGAACAAGCAGAGACTCTTCCGAGACTACTGGACGCGCCAAGTTTGGAAAACGAGAATGCC AGTATAATCTCCTGTGGTGCTCGTCACAGTGCCTTGGTAACCGCTGACAGGAAAGTGTTCTGCTGGGGCTGGAACAAGTACGGCCAGCTTGGATTGGGAG ATGTAATAGACCGGAACGTGCCTAGCCAACTCAGCATGGATGGTTATATCCCCAGAAGTGTGGCGTGTGGTTGGTGGCATACTCTGCTGTTAGCTGAACC GCTGGAGTGA
AA sequence Show only first row Show all	>Lus10004700 pacid=23174270 polypeptide=Lus10004700 locus=Lus10004700.g ID=Lus10004700.BGIv1.0 annot-version=v1.0 MNGEGRAGSAVREDKLVVLMSGYLPGALPQRSPISSPVVVRSDGFGWKDVCGGGCGFAMAISDSGNLITWGSTDDLGQSYLTSGKHGEIPEPFPLPTGAT LTKAAAGWAHCVASTDIGEVYTWGWKECIPSGKIFGEPSTPRVSENDLSERHGQLALEQVSPGPQVAKSSGDTKGVDESKKRRRLSAKQTAESSSSGDDL QSALPCLVTLNPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSHGRDRPAATSRGTISEGQSSRNFGNYIKEIACG GRHSVAITDAGAILAFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIAAVAAGLWHTVCISDDGDVYAFGGNQFGQLGTGAEQAETLPRLLDAPSLENENA SIISCGARHSALVTADRKVFCWGWNKYGQLGLGDVIDRNVPSQLSMDGYIPRSVACGWWHTLLLAEPLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	0	1
AT3G55580			Regulator of chromosome conden...		Lus10040266 [exp]	1.0	0.9834
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	1.4	0.8870
AT5G06980			unknown protein		Lus10026150 [exp]	3.0	0.8631
AT3G12320			unknown protein		Lus10008671 [exp]	6.6	0.8318
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	8.4	0.7904
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	8.7	0.8052
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10034402 [exp]	9.2	0.7286
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	10.4	0.7544
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	11.0	0.7595
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10040786 [exp]	11.5	0.7260

Compare expression of checked genes

Lus10004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.