Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39760 539 / 0 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19000 421 / 6e-146 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G06190 413 / 6e-143 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G03740 401 / 2e-137 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G21010 375 / 1e-127 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT3G43700 369 / 3e-125 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT1G55760 51 / 9e-07 BTB/POZ domain-containing protein (.1) AT5G52330 50 / 2e-06 TRAF-like superfamily protein (.1.2) AT5G06600 50 / 2e-06 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT5G19330 50 / 2e-06 ARIA ARM repeat protein interacting with ABF2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040267 [exp] 736 / 0 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10021946 [exp] 412 / 2e-142 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10008421 [exp] 403 / 2e-137 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10003365 [exp] 401 / 1e-136 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10041235 [exp] 171 / 2e-50 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10042583 [exp] 54 / 2e-07 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 51 / 1e-06 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10034070 [exp] 51 / 2e-06 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 50 / 2e-06 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199200 [exp] 620 / 0 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.008G059600 [exp] 617 / 0 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G029500 [exp] 424 / 4e-147 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 409 / 3e-141 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 404 / 2e-139 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 401 / 4e-138 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 379 / 6e-129 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 171 / 1e-50 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.005G210000 [exp] 54 / 1e-07 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 52 / 8e-07 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10004701 pacid=23174250 polypeptide=Lus10004701 locus=Lus10004701.g ID=Lus10004701.BGIv1.0 annot-version=v1.0 ATGGCTGAAAATTTGGGAGAATGGAAGTCGGAGGTGGAGGAGGAGCCTCCGTCGTGTTCAAAGTCGGTGAACGAGACGGTGAATGGGTCGCATCAGTTTA CGATAAAGGGTTACTCTTTGGCCAAAGGTATGGGGGCGGGGAAGTGCATTTCCAGTGATATTTTTACGGTGGGTGGTTATGACTGGGCGATCTACTTCTA TCCGGATGGGAAAAACCCCGAGGATAGCTCCATGTACGTTTCTGTCTTCATTGCTTTGGCCAGCGATGGTACTGACGTGAGGGCGTTGTTTGAGCTGACG TTACTGGATCAGAGTGGGAAAGGGAAGCATAAGGTGCATAGCCACTTTGATCGTGCTCTGGAGAGCGGGCCTTACAGTTTGAAGTACAAAGGGAGCATGT GGGGTTATAAGCGATTCTTCCGGAGAACAAGCTTAGAAACTTCAGATTATTTAAAGGATGATTGCCTTATCATGAACTGCACTGTTGGAGTGGTTAAAAC CCGCCTTGAAGGACCAAAACATTATTCAGTCGCGGTTCCACTTTCCAACATGGGTCAGGGTCTAAAGGAAATCCTGGAATCTGAAATTGGTTGCGACGTA ACACTTCGTGTAGGCGATGAAGCCTTTAAAGCTCATAAGCTGATCCTTGCTGCGAGAACACCTGTTTTCAGAGCCCAGTTCTTTGGACTAGTTGGAGATC CGAATATGGATGAAGTTGTAGTGAATGATATTGATCCCTCAATCTTCAAGGCGATGCTCTTATTCATTTACACTGACAAACTTCCTGAAGTGCATGATAT TGTGGGCTCCTCATCCATGTCCACTTGCACATCAACCAACATGATACAACACTTGTTAGCCGCTGCTGACCTATACAACTTAGATCGGTTGAAGCTGTTA TGTGAATCAAAGTTATGCGAGGAGCTCACTGCCGAATCGGTCGCCACAACGCTAGCATTGGCTGAGCAGCATCAGTGCGCACAACTCAAAGCTGTCTGTT TGAAATTTGCAGCAAATCCTGCCAACTTGGGAGCCGTGATGCAGTCGGAAGGTTTCAGACACCTGGAAGAGAGCTGCCCTTCATTGCTGTGTGAGTTGCT GAAGACGTTTGCTTCAGCTGACGAAAACTCAGGGATGCAATCAGGTAGGAAGAGGGGTTTGAGCAGTGTATATGGGTTGGATACAGCTCCAGCAGCAGGG GAAGCAGATGCAGAGGGTGTTGTGGCCGAATCAACCAATCCAAACATGATGAGGCGCGTCAGGAGACGTTACTAG
AA sequence Show only first row Show all	>Lus10004701 pacid=23174250 polypeptide=Lus10004701 locus=Lus10004701.g ID=Lus10004701.BGIv1.0 annot-version=v1.0 MAENLGEWKSEVEEEPPSCSKSVNETVNGSHQFTIKGYSLAKGMGAGKCISSDIFTVGGYDWAIYFYPDGKNPEDSSMYVSVFIALASDGTDVRALFELT LLDQSGKGKHKVHSHFDRALESGPYSLKYKGSMWGYKRFFRRTSLETSDYLKDDCLIMNCTVGVVKTRLEGPKHYSVAVPLSNMGQGLKEILESEIGCDV TLRVGDEAFKAHKLILAARTPVFRAQFFGLVGDPNMDEVVVNDIDPSIFKAMLLFIYTDKLPEVHDIVGSSSMSTCTSTNMIQHLLAAADLYNLDRLKLL CESKLCEELTAESVATTLALAEQHQCAQLKAVCLKFAANPANLGAVMQSEGFRHLEESCPSLLCELLKTFASADENSGMQSGRKRGLSSVYGLDTAPAAG EADAEGVVAESTNPNMMRRVRRRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	0	1
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	5.5	0.7262
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	10.2	0.7092
AT4G33890			unknown protein		Lus10002119 [exp]	10.4	0.6784
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	12.8	0.7067
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	14.8	0.7134
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	19.9	0.7016
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	20.2	0.6637
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	20.5	0.6386
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10040267 [exp]	24.5	0.6594
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	25.2	0.6768

Compare expression of checked genes

Lus10004701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.