Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39750 977 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 952 / 0 Putative methyltransferase family protein (.1) AT1G77260 857 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 492 / 8e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 490 / 1e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 486 / 6e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 484 / 3e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G56080 472 / 2e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 471 / 4e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 468 / 4e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040268 [exp] 1139 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 1095 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 1093 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 644 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 637 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 632 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 544 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 493 / 1e-165 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 488 / 2e-163 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 1008 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 970 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 829 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 503 / 4e-167 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 486 / 7e-165 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 489 / 3e-163 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 486 / 3e-162 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 486 / 4e-162 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 483 / 5e-161 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G017400 [exp] 479 / 8e-157 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004702 pacid=23174272 polypeptide=Lus10004702 locus=Lus10004702.g ID=Lus10004702.BGIv1.0 annot-version=v1.0 ATGAAATCGTCGGATATCGTCAAGATCGCCGGATTCACGCTGATAACACTCTCCTTTTTCTACTTGGGCAAGCACTGGAGCTCCAATGGAAGCTTCCAGC AGCTCGTTTTCTTCTCTTCTTCACCAGCAACAGCCTCTGTCGGTGTATCTCCGAACCAGAGGAAGCCGTTTAATGTCACTGCTTTGATCAGCCAAACCGA CACGCTATCGGAACCCCAACCTCCCAGTGCTTCGGCGGGGGAATCGGATAAGAGATTTGGGGTTGTTGATGGGGATGGGAAGATGAGCGATGAATTTGAA GTCTGGGAGGTAGTAGATCCGGAAGTTGTGGAGAATTGGGGGAATGGGAATGAGACTGGGACTGGAAGTGAAGGTGGGAAGGAATCTAGGGTGAGGGTGA AAAGATTCCAGCTGTGTGATGAGAGCATGAGAGAGTATATTCCGTGTTTGGACAATGGGGAGGCAATCAAGAGTTTGAAATCGACGGAGAAAGGGGAGAG ATTCGAGAGGCATTGCCCTGCCAGAGGAAAAGGTTTGAATTGCTTGGTTCCGCCGCCTAAAGGATATCGGCAACCAATCCCATGGCCACGGAGTCGTGAT GAGGTGTGGTTTTCCAATGTACCCCATACTCGTTTGGTTGAAGATAAAGGAGGTCAGAACTGGATTTCCAAAGACAAGGACAAGTTCAAGTTCCCTGGCG GTGGGACACAGTTCATCCATGGCGCAGATCAATACTTGGATCAGATTTCTAAGATGGTACCAGATATTGCTTTTGGTAATCGAACAAGGGTAGTTCTGGA CGTTGGATGTGGTGTAGCAAGTTTTGGTGCTTATCTACTAACACGGGATGTCTTACCTTTGTCAATAGCTCCCAAAGATGTTCATGAAAACCAGATTCAG TTTGCTCTGGAGCGTGGTGTCCCTGCTATGGTGGCTGCATTTGCCACTCATCGTTTGATGTATCCAAGTCAGGCATTTGAAATAATCCATTGCTCAAGAT GTAGAATCAATTGGACTCGTGATGATGGAATATTGCTACTTGAGGTCAACAGGATAATGCGAGCTGGGGGATACTTTGCTTGGGCTGCCCAGCCGGTCTA CAAGCACGAGCCGGCACTGGAGGAACAGTGGGAAGAGATGCTTAACCTCACAACTCGACTTTGCTGGGAACTCGTTAAGAAAGAGGGGTATATTGCAATC TGGCAGAAACCCAAGAACAACAGCTGCTACTTAAGCCGAGGCGTTCGAGTCGGACCTCCGTTGTGTGAACCAGATGATGATCCTGATAATGTTTGGTATG CTGATTTGAAAGCATGCATTACTCGCATCCCCGAGAATGGATATGGAGCAAATGTCACCGCATGGCCTGCTCGTCTACATACTCCTCCTGATAGACTTCA GAGTATACAAATGGATGCTTACATTTCCAGGAAAGAGCTTTTCAATGCTGAATCAAAATATTGGTCTGAAATTATAACCGGCTACGTCCGTGCCTGGCAT TGGAAACAGCTTAAACTTAGAAATGTCCTGGATATGAAAGCTGGTTTTGGAGGATTTGCTGCTGCTCTAATTGATCAGGGGTTCAATAGCTGGGTTCTAA ACGTAGTTCCTGTTAGTGGGCCAAACACGCTTCCTGTCATATATGATCGTGGACTGCTCGGAGTCATGCATGATTGGTGTGAGCCGTTCGATACATATCC AAGAACCTATGATTTATTGCATGCTTCTGGGCTTTTTACTGTTGAAAGCAAAAGGTGTAACATGTCTACGATCATGCTTGAGATGGACCGCATACTCAGA CCTGGAGGTCGAGCATACATCCGGGACACCCTTAATGTCATGGAAGAACTTCAAGATATCGCCAATGCAATGGGTTGGCATTCGGCCTTACACGACACGT CTGAGGGTCCTCATGCTAGTTACAGGGTCTTGGTATGCGACAAACGACTTTTACGTTCTTGA
AA sequence Show only first row Show all	>Lus10004702 pacid=23174272 polypeptide=Lus10004702 locus=Lus10004702.g ID=Lus10004702.BGIv1.0 annot-version=v1.0 MKSSDIVKIAGFTLITLSFFYLGKHWSSNGSFQQLVFFSSSPATASVGVSPNQRKPFNVTALISQTDTLSEPQPPSASAGESDKRFGVVDGDGKMSDEFE VWEVVDPEVVENWGNGNETGTGSEGGKESRVRVKRFQLCDESMREYIPCLDNGEAIKSLKSTEKGERFERHCPARGKGLNCLVPPPKGYRQPIPWPRSRD EVWFSNVPHTRLVEDKGGQNWISKDKDKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGNRTRVVLDVGCGVASFGAYLLTRDVLPLSIAPKDVHENQIQ FALERGVPAMVAAFATHRLMYPSQAFEIIHCSRCRINWTRDDGILLLEVNRIMRAGGYFAWAAQPVYKHEPALEEQWEEMLNLTTRLCWELVKKEGYIAI WQKPKNNSCYLSRGVRVGPPLCEPDDDPDNVWYADLKACITRIPENGYGANVTAWPARLHTPPDRLQSIQMDAYISRKELFNAESKYWSEIITGYVRAWH WKQLKLRNVLDMKAGFGGFAAALIDQGFNSWVLNVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHASGLFTVESKRCNMSTIMLEMDRILR PGGRAYIRDTLNVMEELQDIANAMGWHSALHDTSEGPHASYRVLVCDKRLLRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	0	1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	2.0	0.9290
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	2.4	0.9281
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	3.0	0.9226
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	3.5	0.9197
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	4.2	0.9169
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	4.5	0.8971
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	4.6	0.9070
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10026370 [exp]	6.2	0.8570
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	6.3	0.8777
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	6.9	0.9048

Compare expression of checked genes

Lus10004702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.