Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29380 335 / 8e-113 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 333 / 8e-112 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT1G07430 326 / 3e-108 HAI2 highly ABA-induced PP2C gene 2 (.1) AT5G59220 301 / 4e-99 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT4G26080 223 / 2e-68 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G51760 218 / 8e-67 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G57050 215 / 8e-66 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 214 / 4e-64 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 213 / 7e-64 HAB2 homology to ABI2 (.1) AT1G43900 150 / 1e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040270 [exp] 655 / 0 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10016493 [exp] 336 / 2e-112 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040738 [exp] 332 / 4e-110 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10019017 [exp] 224 / 1e-69 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10026447 [exp] 205 / 3e-60 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 204 / 6e-60 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 197 / 5e-59 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10003399 [exp] 192 / 2e-58 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10034965 [exp] 173 / 3e-50 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059200 [exp] 408 / 4e-141 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 406 / 2e-140 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.009G037300 [exp] 352 / 2e-118 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.001G245200 [exp] 343 / 3e-115 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.015G018800 [exp] 231 / 2e-72 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 226 / 6e-70 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 218 / 8e-67 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.001G092100 [exp] 218 / 8e-67 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 216 / 1e-66 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.018G060300 [exp] 211 / 1e-62 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10004703 pacid=23174280 polypeptide=Lus10004703 locus=Lus10004703.g ID=Lus10004703.BGIv1.0 annot-version=v1.0 ATGGCTGGGATGTGTTGTGGAGTTGTTGGTGAGACTGAGGTTGCTGCGACTGTGGAGCCGGCAACCTCCAAAGTTTCTCGCCGGAGGCGATTGGAGCACC GTCAGTTCTCGATCTCTCTTGATGTGGCCGCGCCTTCCTTTTCTTCAGATGGAATCAGCAGGAAACAGCGTAAGCTCGTTCACTCTGCTGCTGCTCCGAG TAGCTCCCGCGATTGCCTGAACGCAGTTGAGAATTCCAGTGATTTGAAAAGAGATGACGTGGAATCCGCTGCTCCGAAATCTGTTGTTAATGAATCTTCT GATCTGAAATTGGAGCTCGATAGTGGAGGTCCGGATGTGAAATTCGGCTTGACCTCAGTTTGTGGGAGGAGGAGGGATATGGAAGATGCCGTTTCCATAC AGACATCATTCGGCCCGCGGGAAGGCACATCTTTCTTCGGCGTGTTCGACGGTCACGGTTGCTCTCATGTGGCGATGAAATGCAAGGATCGGTTACATGA GATATTGGAAGAAGAAATCAGGAGTTACGAGGAGGATCCAATCGAATGGAAGGAAACCATGGGACGATGCTTCGCAAGAATGGACGGAGAGGTCGCAGTC TGGAGCGAGGAAGCAGCTAAGGCTTCCACTTGCCGCTGCGAGCTCCAAACGCCGCAGTGCGACGCTGTCGGATCTACTGCAGTTGCAGCTGTGGTGACTC ATGATAAGATCGTTGTCTCCAACTGCGGTGATTCCCGTGCCGTCCTCTGCCGTAATGGCGTCGCTATCCCCCTCTCTTCCGATCATAAGCCTGACCGGCC CGATGAGTTGCTCCGAATCGAAGCTGCCGGTGGCCGCGTGATATACTGGGACGGGGCGCGAGTCCTCGGAGTTCTAGCCATGTCCAGAGCAATCGGTGAC AACTACTTGAAACCGTACGTGATTCCGGAGCCGGAGGTAACAATAACCGAGAGGACAGGCGACGAGGAGTGTTTAATCCTCGCCAGCGACGGCCTGTGGG ACGTGGTCTCGAACGAAACCGCTTGCGGAGTAGTCAAGATGTGCCTCGCAGGTCAAAAGTCCTCGTCCCCGATGGGTTCCGACGGCGTGGACGCCGCCGT GGGGAGTGGCTCTGACAAGGCCTGCTTCGATGCTTCCATGCTACTGACGAAGCTGGCCCTCGCCAGGCACAGTAGTGACAACGTCAGCGTGGTCGTCGTT GATTTAAGACGGAAATCATCATCATCTTCGGACTCGACGAAATCTTAA
AA sequence Show only first row Show all	>Lus10004703 pacid=23174280 polypeptide=Lus10004703 locus=Lus10004703.g ID=Lus10004703.BGIv1.0 annot-version=v1.0 MAGMCCGVVGETEVAATVEPATSKVSRRRRLEHRQFSISLDVAAPSFSSDGISRKQRKLVHSAAAPSSSRDCLNAVENSSDLKRDDVESAAPKSVVNESS DLKLELDSGGPDVKFGLTSVCGRRRDMEDAVSIQTSFGPREGTSFFGVFDGHGCSHVAMKCKDRLHEILEEEIRSYEEDPIEWKETMGRCFARMDGEVAV WSEEAAKASTCRCELQTPQCDAVGSTAVAAVVTHDKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRIEAAGGRVIYWDGARVLGVLAMSRAIGD NYLKPYVIPEPEVTITERTGDEECLILASDGLWDVVSNETACGVVKMCLAGQKSSSPMGSDGVDAAVGSGSDKACFDASMLLTKLALARHSSDNVSVVVV DLRRKSSSSSDSTKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10004703 [exp]	0	1
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	2.4	0.8699
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	4.0	0.8749
AT5G43950			Plant protein of unknown funct...		Lus10022871 [exp]	5.3	0.8488
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	12.0	0.8515
AT3G19900			unknown protein		Lus10034203 [exp]	12.2	0.8522
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	12.2	0.8366
AT1G61930			Protein of unknown function, D...		Lus10006775 [exp]	16.2	0.8386
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	17.7	0.8500
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	18.5	0.8390
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	22.4	0.8130

Compare expression of checked genes

Lus10004703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.