Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 2157 / 0 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012890 [exp] 2451 / 0 AT1G74260 2323 / 0.0 purine biosynthesis 4 (.1) Lus10030542 [exp] 2435 / 0 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10040273 [exp] 927 / 0 AT1G74260 921 / 0.0 purine biosynthesis 4 (.1) Lus10040272 [exp] 493 / 6e-164 AT1G74260 366 / 1e-116 purine biosynthesis 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200200 [exp] 2282 / 0 AT1G74260 2285 / 0.0 purine biosynthesis 4 (.1) Potri.008G058600 [exp] 1609 / 0 AT1G74260 1642 / 0.0 purine biosynthesis 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004706 pacid=23174282 polypeptide=Lus10004706 locus=Lus10004706.g ID=Lus10004706.BGIv1.0 annot-version=v1.0 ATGGCGGTCACGGGAGAGTTAGCTGCAACAGCTACTGAGCTCTTGAGAGGAACACAAGGGCAAACTCTGTTTCTAAACAGGAATTCGCCTCTCAACAGGC GAAACGAATTGATATTGGGAACACTCCGCGCTGGAAGACGAGCTGTCTCACTGAGATGTTCTTCTAACACGCAAAAGGCAAGAGCTTTGGTTTCTGGAGG TTTGGGAAGCTCTGTTGATGAACAGCCCAGGTTTTCTGACAAGCCATCAGAAGAAGTTATCCATTTCTATAGGGTACCTTCTATTCAAGAGAGTGCAACT CTTGAACTGCTCAAGTCGGCTCAAATCAAAGTGTCGAATGACATTGTCGGGTTGCAGACCGAACACTGTTACAATGTTGGGCTCACTTCCCAGCTTTCGA GCGACAAGCTTGCTGTACTTGGGTGGCTTCTACAAGAAACATACGAGCCTGAGAATTTGGACACTGAGAGCTTCCTTCAGAGGAAGAAAAGGGAAGGTTT AAGTACTGTTATAGTTGAGGTTGGTCCCAGGTTGTCTTTCACTACTGCTTGGTCCGCAAATGCTGTTTCGATATGCAGTGCTTGTGGGCTTAATGAGGTG ACTAGATTGGAAAGGTCCAGGAGGTATTTGTTATATAGTAAGGGTCCTTTACCAGATTATCAGATAAACGAGTTTGCGTCCATGGTTCATGATCGAATGA CTGAGTGTGTCTATACTCAGAAGTTGACGTCTTTTGCGACCAGTGTGGTTCCCGAGGAAGTTCGGTTCGTTCCTGTTATGGAGAGGGGGAGGGAGGCGTT GGAGGAGATTAATCAGGAGATGGGTTTAGCTTTTGACGAGCAAGATTTGCAGTATTACACCAGGCTGTTTAGGGAGGATATCAAAAGGAATCCCTCAACC GTGGAGTTATTTGACATTGCACAGTCTAACAGCGAGCATAGCAGACATTGGTTTTTCACTGGAAAGATTGTTGTTGATGGGGAGCCCATGAACAGAACTC TAATGCAGATTGTGAAGAGCACATTACAGGCAAATCCGAAAAACTCTGTTATTGGGTTCAAGGATAATTCTAGTGCAATCAGGGGTTTCCCTGTGCAACA TTTACGGCCAACTAAGCCTGGGCTACCCAGTTCACTGGATGCCACTTCTCAGGACCTTGATATTCTCTTTACAGCTGAGACACATAATTTTCCTTGTGCT GTGGCACCTTACCCTGGTGCAGAGACAGGTGCGGGGGGTCGAATCAGGGATACCCATGCAACAGGTCGGGGATCATTTGTTGTTGCATCAACTGCTGGAT ATTGTGTCGGTAACCTGAATATGGAAGAATCATATGCTCCATGGGAAGACCCGTCTTTTGCATATCCGTCAAACTTGGCGTCACCTCTGCAGATTCTAGT TGATGCTAGCAATGGTGCATCAGACTACGGAAATAAATTTGGGGAACCCTTGATTCAAGGATATACCCGAACCTTTGGAATGAGACTTCCAAGTGGGGAG AGAAGAGAATGGTTGAAGCCGATTATGTTCAGTGCAGGCATTGGGCAGATTGACCATATCCACATAACTAAAGGGGAGCCTGATATTGGTATGTTGGTAG TCAAGATTGGAGGTCCAGCATACCGAATTGGCATGGGAGGTGGAGCAGCATCGAGCATGGTTAGCGGACAGAACGATGCCGAGCTTGATTTCAACGCTGT ACAACGTGGAGATGCTGAGATGGCGCAAAAGTTGTATCGTGTTGTTCGTGCTTGTATTGAGATGGGTGACAAGAACCCTATCATCAGCATCCATGATCAA GGAGCTGGTGGTAACTGCAACGTTGTAAAAGAAATTATATACCCACAGGGAGCTGAAATTGACATCCGGGCAATTGTAGTTGGTGATCATACCATGTCTG TCTTGGAGATATGGGGTGCAGAGTATCAGGAGCAAGATGCAATCTTGGTGAAACCTGAAAGCCGAAGCCTCTTGCAATCAATCTGTGGAAGGGAAAGGTT GTCTATGGCTGTTATAGGGACAATAAGTGGAGATGGACGTTGTGTTTTGATTGATAGATTAGCAGCTGAGAAATCTCGCTCTAGTGGACTTCCTGCTCCT CCTCCTGCAGTAGATCTTGAGCTTAGTAAAGTACTCGGGGACATGCCTCAGAAGACTTTTGAATTCCAACGGGTTGCTAAAGTTCAAGAACCACTGAACA TTGCTCCTGGGCTTACTGTTTTGGATGCCTTGAAGAGGGTATTGCGTCTTCCGTCTGTATGTTCGAAGCGTTTCTTAACAACAAAAGCTGATAGGTGTGT TACAGGGCTTGTAGCCCAGCAACAAACTGTGGGTCCATTGCAAATTACTCTTGCTGATGTGGCTGTCATTGCTCAGACTTATTCGGACTTAACTGGAGGT GCTTGTGCTATTGGGGAGCAACCGATTAAAGGCTTGCTTAATCCAAAAGCAATGGCAAGATTGGCAGTTGGAGAAGCACTCACAAATTTGGTTTGGGCGA AGGTTACATCTCTTTCTGATGTTAAAGCAAGTGGAAATTGGATGTATGCTGCCAAGCTTGATGGAGAAGGAGCTGATATGTATGATGCTGCAATAGCTCT TTCAGAAGCTATGGTTGAACTTGGCATTGCAATTGATGGTGATGATGGAGTTCTGCTTCATATTGATTTGGGCAAGGGAAATCGACGTTTAGGAGCTTCT GCACTTGCTCAGGCTTTTGATCAAGTTGGAGACGACTGTCCTGATCTTGAGGATGTTTCTTATCTGAAGAAGGTATTTGATGGTGTCCAGAATCTAATTA CAGATGAGCTCATCTCATCCGGTCATGATATCAGTGATGGTGGCTTACTTGTCTGTGCATTAGAAATGGCATTCGCTGGGAATCGTGGCATTACTTTGGA CTTGCAGTCACATGGTAAGAGTCTCTTCCAGACTCTGTTTGCAGAAGAGCTAGGCCTGATTGCTGAGGTTAGCAGGGAAAACTTAGATAAGGTAATGGGA AAACTTAACAGTGAAGGGGTTACGGCAGAAGTTATTGGTGAAGTAACTATTTCTCCATTGGTGGAACTCATTGTTGATGGGCAAACTCAATTGAGAGAGG AGACTTCACTTCTCAGAGACATGTGGGAGGACACCAGTTTTCAGCTAGAAAAGCTTCAAAGATTGGCTTCTTGTGTGGAGTCGGAGAAAGAGGGTTTAAA ATACAGACATGAGCCTTTGTGGAAACTGTCTTTCTCCCCATCTCTTACTGATAAAAAATATCTTACTGCTACTTCTAAACCAAAGGTTGCCATAATCCGA GAGGAAGGAAGCAACGGAGACAGGGAAATGTCAGCTGCATTCTATGCTGCTGGGTTTGAACCATGGGATATAGCCATGTCTGATCTTCTTAATGGAGCCA TATATCTTGGTGAATTCCGGGGTATTGTGTTTGTGGGAGGTTTTAGCTACGCTGATGTGCTCGATTCTGCAAAAGGTTGGTCTGCTTCCATCCGATTCAA CCAGCCTCTTTTGGCCCAATTTCAGGAATTCTACAAGCGGCCAGATACTTTCAGTCTTGGTATTTGTAACGGTTGTCAGCTCATGGCTCTTTTGGGGTGG GTTCCTGGTCCCCAGGTTGGAGGTGTGCTTGGGGGTGGAGGTGACCCTTCGCAGCCACGATTTGTTCACAATGAGTCGGGTCGCTTCGAATGCCGGTTCA CAAGTGTGACGATACAAGAGTCTCCTTCTGTAATGCTCAAAGGAATGGAAGGAAGTACACTGGGTGTGTGGGCAGCTCATGGTGAGGGGAGGGCATACTT CCCGGATGACGGTGTTCTTGATCGTGTTATTCATTCAAACTTGGCACCGGTCAGATATGCTGATGATGATGGAAATCCGACAGAGTCTTACCCGTTCAAT GTAAATGGTTCTCCATTAGGAGTGGCTGCAATCTGCTCTCCTGATGGGAGGCATCTTGCCATGATGCCTCATCCGGAGCGTTGCTTCTTAATGTGGCAAT TCCCCTGGTACCCGACCCACTGGGATGTTGACAAGAAAGGCCCTAGTCCATGGTTAAAGATGTTTCAGAATGCCAGAGAATGGTGCTCTTGA
AA sequence Show only first row Show all	>Lus10004706 pacid=23174282 polypeptide=Lus10004706 locus=Lus10004706.g ID=Lus10004706.BGIv1.0 annot-version=v1.0 MAVTGELAATATELLRGTQGQTLFLNRNSPLNRRNELILGTLRAGRRAVSLRCSSNTQKARALVSGGLGSSVDEQPRFSDKPSEEVIHFYRVPSIQESAT LELLKSAQIKVSNDIVGLQTEHCYNVGLTSQLSSDKLAVLGWLLQETYEPENLDTESFLQRKKREGLSTVIVEVGPRLSFTTAWSANAVSICSACGLNEV TRLERSRRYLLYSKGPLPDYQINEFASMVHDRMTECVYTQKLTSFATSVVPEEVRFVPVMERGREALEEINQEMGLAFDEQDLQYYTRLFREDIKRNPST VELFDIAQSNSEHSRHWFFTGKIVVDGEPMNRTLMQIVKSTLQANPKNSVIGFKDNSSAIRGFPVQHLRPTKPGLPSSLDATSQDLDILFTAETHNFPCA VAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNMEESYAPWEDPSFAYPSNLASPLQILVDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGE RREWLKPIMFSAGIGQIDHIHITKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACIEMGDKNPIISIHDQ GAGGNCNVVKEIIYPQGAEIDIRAIVVGDHTMSVLEIWGAEYQEQDAILVKPESRSLLQSICGRERLSMAVIGTISGDGRCVLIDRLAAEKSRSSGLPAP PPAVDLELSKVLGDMPQKTFEFQRVAKVQEPLNIAPGLTVLDALKRVLRLPSVCSKRFLTTKADRCVTGLVAQQQTVGPLQITLADVAVIAQTYSDLTGG ACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGADMYDAAIALSEAMVELGIAIDGDDGVLLHIDLGKGNRRLGAS ALAQAFDQVGDDCPDLEDVSYLKKVFDGVQNLITDELISSGHDISDGGLLVCALEMAFAGNRGITLDLQSHGKSLFQTLFAEELGLIAEVSRENLDKVMG KLNSEGVTAEVIGEVTISPLVELIVDGQTQLREETSLLRDMWEDTSFQLEKLQRLASCVESEKEGLKYRHEPLWKLSFSPSLTDKKYLTATSKPKVAIIR EEGSNGDREMSAAFYAAGFEPWDIAMSDLLNGAIYLGEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLAQFQEFYKRPDTFSLGICNGCQLMALLGW VPGPQVGGVLGGGGDPSQPRFVHNESGRFECRFTSVTIQESPSVMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRVIHSNLAPVRYADDDGNPTESYPFN VNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPTHWDVDKKGPSPWLKMFQNAREWCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	0	1
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	1.4	0.9135
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	5.7	0.9080
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	6.3	0.9111
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	7.4	0.8912
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	8.2	0.8981
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	10.2	0.8846
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	14.8	0.8786
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	15.5	0.8590
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	16.2	0.8835
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	17.1	0.8676

Compare expression of checked genes

Lus10004706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.