Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06080 153 / 2e-47 AS2 LBD33 LOB domain-containing protein 33 (.1) AT3G58190 149 / 5e-45 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G42430 147 / 4e-44 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G03760 147 / 6e-44 AS2 LBD20 LOB domain-containing protein 20 (.1) AT2G42440 143 / 9e-43 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT4G00210 140 / 8e-42 AS2 LBD31 LOB domain-containing protein 31 (.1) AT2G45420 136 / 9e-40 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT2G31310 131 / 9e-39 AS2 LBD14 LOB domain-containing protein 14 (.1) AT4G00220 129 / 2e-37 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT2G45410 127 / 4e-37 AS2 LBD19 LOB domain-containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040274 [exp] 266 / 6e-92 AT5G06080 127 / 1e-37 LOB domain-containing protein 33 (.1) Lus10000613 [exp] 148 / 9e-45 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10033873 [exp] 147 / 2e-44 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000707 [exp] 139 / 6e-41 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 135 / 2e-39 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10024877 [exp] 134 / 1e-38 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 129 / 5e-37 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10009298 [exp] 126 / 3e-36 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10019633 [exp] 119 / 1e-32 AT5G66870 181 / 7e-55 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200400 [exp] 228 / 4e-76 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.002G041100 [exp] 150 / 1e-45 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.013G064501 [exp] 146 / 6e-44 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.005G221900 [exp] 143 / 6e-43 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G041200 [exp] 142 / 1e-42 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G149000 [exp] 141 / 5e-42 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.014G070400 [exp] 141 / 6e-42 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.014G070300 [exp] 138 / 2e-41 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 133 / 4e-39 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.013G081200 [exp] 120 / 4e-34 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10004707 pacid=23174274 polypeptide=Lus10004707 locus=Lus10004707.g ID=Lus10004707.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCATGTGGTGCATGTAAGTTCCTAAGAAGAAAGTGCATGCAGGAGTGTGTTTTTGCACCTTACTTCAGTTATCACCAAGCTGCATCCCATT TCGGGGCAGTGCATAAGGTTTTTGGTGCAAGCAATGTTTCAAAGCTACTACTTCGCTTACCGGTCAACTTTAGAAGTGATGCTGCAGTCACCATTGCTTA CCAAGCATTGGCACGTATCCAGGATCCAGCTTATGGCTGTGTTTCTTACATCATGGCCCTCCAGCAACAGGTCGCCAGCATACAGCATGAGATTGAAATT TTTAGCCACCAGTTGGCTTTGAACTCAACCACCCCACTTCACAGCATACATGCAAGTCCAACGTCAAACTTCGAGACGCTGTGTTCTCCTCGTCCAGATA CCACCGGCACACACTGCTATCAGAATCAACAAACTTTACAGCTTGACAATTCAGAACTTACTGCTGGAAGCATAGAGTTCGATAGCAAAATGACATCAGA GCTTCTGCCTCTGTATGGATGGGAAGACCAGAACCCTTTCTGGAACTCTGCACATCACAACAGCTTAGACGAACTCCTTAAGGGAGTGGACTGCTAG
AA sequence Show only first row Show all	>Lus10004707 pacid=23174274 polypeptide=Lus10004707 locus=Lus10004707.g ID=Lus10004707.BGIv1.0 annot-version=v1.0 MGSSCGACKFLRRKCMQECVFAPYFSYHQAASHFGAVHKVFGASNVSKLLLRLPVNFRSDAAVTIAYQALARIQDPAYGCVSYIMALQQQVASIQHEIEI FSHQLALNSTTPLHSIHASPTSNFETLCSPRPDTTGTHCYQNQQTLQLDNSELTAGSIEFDSKMTSELLPLYGWEDQNPFWNSAHHNSLDELLKGVDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	0	1
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	2.8	0.8960
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	6.0	0.8979
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	13.4	0.8376
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	14.0	0.8694
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	15.8	0.8893
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	16.4	0.8639
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	16.6	0.8718
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	19.0	0.8683
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	29.2	0.7703
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	31.9	0.8627

Compare expression of checked genes

Lus10004707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.