Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 223 / 6e-68 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 193 / 2e-56 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 187 / 2e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 172 / 8e-49 RLK receptor lectin kinase (.1) AT4G02410 171 / 3e-48 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29250 168 / 1e-47 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 166 / 9e-47 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 161 / 8e-45 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29220 159 / 4e-44 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 158 / 1e-43 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040276 [exp] 426 / 7e-146 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 281 / 7e-90 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 279 / 6e-89 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 197 / 5e-58 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 195 / 3e-57 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 187 / 2e-54 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10008597 [exp] 187 / 4e-54 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 179 / 2e-51 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 178 / 7e-51 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101000 [exp] 267 / 2e-84 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 267 / 3e-84 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 247 / 5e-77 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 208 / 2e-62 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 208 / 3e-62 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 199 / 1e-59 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 192 / 3e-56 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 189 / 6e-56 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 189 / 3e-55 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 181 / 5e-52 AT2G37710 770 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004709 pacid=23174286 polypeptide=Lus10004709 locus=Lus10004709.g ID=Lus10004709.BGIv1.0 annot-version=v1.0 ATGTCCCCCAAACTACAGCTCCTCATCCTCTTCTCTTCTCTCATTTCGACTCAATCTGACCTCTTCTTCCGAGGATTCAAACAATCACCCACCACCACCG GCAACCTCACCTTAAACGGAGCTTCCCAAATCGAAACCAACGGCTTACTCCGACTAACAAACACCACCCGCCGGTTAATCGGTCACGCTTTCTACTCATC ACTCTTCCGCCTGAAAACCAACAAAAAAGCTCTCTCCTTTTCCACCGCCTTCGCTTTCGCCATAGTCCCCGAGTACCCAAAGCTCGGTGGCCATGGCTTG GCATTCACTATCTCCTCCACACCAACTCACCTCCTCCTCCCCAGCGCCCTCCCAAGCCAGTACCTCGGCCTATTCAACTTAACCGACGTCGGAAACCTCA CCAACCACATTCTCGCCGTCGAATTCGACACCGTTCAGGACTTCGAGTTCGGCGACATCAACGATAACCACGTCGGAATCGATTTGGACGGGCTGCGGTC TAACAAATCCGTCGCTACTGATTTTAATCTGAAATGCGGAAAACCGATTCAAGCTTGGATCGATTACGATTCGAGCAAAAATCTACTGGAAGTAAGACTC GCTCCTTCTTCTGATAAACCTAAATCCCCAATCTTGTCGTTTCATGTAGATCTCTCTCCATTTTTCCTCGATTACATGTTCGTTGGATTCGCTGCTTCCA CTGGACTGTTAGCGAGTAGTCACTACGTTCTTGGATGGAGCTTTAGTATCAATGGAGGAGAAGCCAAATCTTTATCCCTTTCCAATCTGCCTAAGCTTCC CGGATCCAAAAAGGGAAACAACGGTCTTTTGATCTTGGGCGTATCAGTTTGTGGTCATTGTAATAATGGCTGCTGTTGCTGCTTTTTACCTGATTAG
AA sequence Show only first row Show all	>Lus10004709 pacid=23174286 polypeptide=Lus10004709 locus=Lus10004709.g ID=Lus10004709.BGIv1.0 annot-version=v1.0 MSPKLQLLILFSSLISTQSDLFFRGFKQSPTTTGNLTLNGASQIETNGLLRLTNTTRRLIGHAFYSSLFRLKTNKKALSFSTAFAFAIVPEYPKLGGHGL AFTISSTPTHLLLPSALPSQYLGLFNLTDVGNLTNHILAVEFDTVQDFEFGDINDNHVGIDLDGLRSNKSVATDFNLKCGKPIQAWIDYDSSKNLLEVRL APSSDKPKSPILSFHVDLSPFFLDYMFVGFAASTGLLASSHYVLGWSFSINGGEAKSLSLSNLPKLPGSKKGNNGLLILGVSVCGHCNNGCCCCFLPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55550			Concanavalin A-like lectin pro...		Lus10004709 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Lus10004710 [exp]	2.6	0.8557
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	7.2	0.7971
AT1G31460			unknown protein		Lus10033293 [exp]	14.3	0.7592
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10017864 [exp]	20.5	0.7699
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	28.1	0.7655
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10017381 [exp]	40.1	0.7069
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	41.0	0.7661
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	41.7	0.7689
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	55.5	0.7493
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	61.5	0.7441

Compare expression of checked genes

Lus10004709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.