Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 473 / 2e-163 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 387 / 4e-130 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 380 / 1e-127 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 377 / 4e-126 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 376 / 5e-126 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 376 / 6e-126 RLK receptor lectin kinase (.1) AT3G59700 370 / 8e-124 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT5G59260 370 / 9e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 368 / 4e-123 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 362 / 1e-120 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040276 [exp] 642 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 429 / 2e-146 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 426 / 6e-145 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 410 / 7e-139 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 408 / 3e-138 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 395 / 4e-133 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 393 / 2e-132 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 393 / 2e-132 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 392 / 2e-132 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200600 [exp] 491 / 1e-170 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 487 / 1e-169 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 457 / 3e-157 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 421 / 2e-143 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 421 / 3e-143 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 420 / 4e-143 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 419 / 2e-142 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G035701 [exp] 411 / 8e-141 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 412 / 4e-140 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.001G244000 [exp] 407 / 7e-138 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004710 pacid=23174252 polypeptide=Lus10004710 locus=Lus10004710.g ID=Lus10004710.BGIv1.0 annot-version=v1.0 ATGAGGAAGAATGCCGATGTGATTGAAGATTGGGAGCTTGACGTCGGTCCTCATCGGTTTAATTACATCGAGCTGAAGAAAGCAACCAAAGGATTCAGAG AAACGGAGCTCCTTGGATTCGGAGGGTTTGGCAAAGTTTACAAAGGCACATTGCCAAGCTCCAGTACTCAAGTTGCTGTTAAGAGAATTTCACACGAATC CAAACAAGGATTCAGAGAGTTTGCTTCTGAGATTTCGACGATCGGTCGTCTTCGCCATAGGAATCTCGTTCAGCTGATCGGATGGTGTCGTAGCAGGCAA GATTTGCTTCTTGTTTACGATTTCATGCCGAATGGAAGCTTGGATCGCTACTTGTTTGATCACGATCATGATCAGGTACTAAGTTGGGAGCAAAGGTACA GGATCTTGAAAGGTGTAGCGTCGGGGATTTTGTACTTGCACGAAGAATGGGAGCAAGCAGTGATCCACAGAGATGTCAAGGCGGGGAATGTGCTGTTGGA TTCCGAATTTCAAGGGAGGCTTGGCGATTTTGGGCTCGCCAAGCTTTACGAGCATGGCTCGAACCCGGGGACCACTAGGGTGGTGGGGACATTGGGGTAC TTAGCGCCGGAGTTGACTCGAACGGGGAAGGCAACCATGAGCTCGGATGTGTTTGCGTTCGGTTCGGTTTTGCTCGAGGTGGTGTGTGGGAGGAGGCCGG TCGAGGTGAAGGCGTTGCCCGAGGAGCTTATATTGGTGGACTGGGTTTGGGAGAAGTGGAGGAGTGGTTGTGTGCTGGATGTGGTTGATTCGAAACTGAA TGGTGAGTTTGATGAGGTTGAGGTTGTTGTTGTTGTGAAGTTGGGGCTGATGTGCTCGAATGATTCGCCCGAGGAAAGGCCGTCGATGAGGCAGGTTGTT AGGTATTTGGATGGAGAGGTTGGATTGCCTGAACTTGTTGCATTCAATGCGAAGAAAGGGAACGATGGTAACGGCGATGGGAGTAAGATGAGGATGAGCT TTAACTCGAACTCGTATCCATCATACTTCGAGAAGGTAAGGACATGA
AA sequence Show only first row Show all	>Lus10004710 pacid=23174252 polypeptide=Lus10004710 locus=Lus10004710.g ID=Lus10004710.BGIv1.0 annot-version=v1.0 MRKNADVIEDWELDVGPHRFNYIELKKATKGFRETELLGFGGFGKVYKGTLPSSSTQVAVKRISHESKQGFREFASEISTIGRLRHRNLVQLIGWCRSRQ DLLLVYDFMPNGSLDRYLFDHDHDQVLSWEQRYRILKGVASGILYLHEEWEQAVIHRDVKAGNVLLDSEFQGRLGDFGLAKLYEHGSNPGTTRVVGTLGY LAPELTRTGKATMSSDVFAFGSVLLEVVCGRRPVEVKALPEELILVDWVWEKWRSGCVLDVVDSKLNGEFDEVEVVVVVKLGLMCSNDSPEERPSMRQVV RYLDGEVGLPELVAFNAKKGNDGNGDGSKMRMSFNSNSYPSYFEKVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55550			Concanavalin A-like lectin pro...		Lus10004710 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Lus10004709 [exp]	2.6	0.8557
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	3.6	0.8767
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	11.0	0.8659
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	14.1	0.8691
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	14.3	0.8714
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	15.5	0.8556
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	16.2	0.8499
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	18.3	0.8685
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	22.2	0.8486
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	23.9	0.8410

Compare expression of checked genes

Lus10004710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.