Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11430 658 / 0 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 644 / 0 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT2G38110 386 / 8e-130 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 374 / 3e-125 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 364 / 4e-121 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11325 354 / 7e-119 Phospholipid/glycerol acyltransferase family protein (.1) AT1G06520 345 / 7e-113 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 280 / 2e-88 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 275 / 2e-86 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036684 [exp] 441 / 6e-151 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 439 / 3e-150 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 379 / 6e-127 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 353 / 7e-117 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 347 / 1e-113 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 328 / 5e-106 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004833 [exp] 300 / 3e-97 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002421 [exp] 299 / 1e-95 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10001449 [exp] 293 / 3e-93 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201200 [exp] 710 / 0 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 687 / 0 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.016G063900 [exp] 464 / 2e-160 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 462 / 1e-159 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 423 / 4e-144 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 411 / 9e-140 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 355 / 1e-117 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.005G202200 [exp] 355 / 2e-117 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 314 / 4e-101 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004711 pacid=23174268 polypeptide=Lus10004711 locus=Lus10004711.g ID=Lus10004711.BGIv1.0 annot-version=v1.0 ATGGCATCATCCGATGTTGTAGCGGAGCTAGAAGGAACGCTCCTCAAGGACCCGGACCCATTCTCCTACTTCATGCTGGTATCCTTTGAGGCGTCCGGCC TCTTGCGGTTCCTCCTCCTCCTCCTTCTCTGGCCCATAATCCAGCTCCTCAACGCCCTCGGAAAGCAAGACGCAGGGCTGAAAGTCATGGTATTCGTGGC CACTGCGGGTGTTCGAGTCTCGGAGATCGAGTCGGTGGCTAGAGCAGTGCTGCCGAAATTTTACATGGATGACGTGGACATGGGGGCTTGGAAGGTGTTT AGCTCGTGCGATAAAAGGGTGGTGGTGACTCGGACTCCCAGGGTTATGGTCGAGAGGTTTGTCAAGGACCACTTGCGTGCGGATGAAGTTATTGGGTGGG AGTTGGTTGTGAACCGGTTTGGATATGCAACTGGTTTGGTCGAGGAGCGTGGTGATGTTGATGTGGTTGTGAGGAGTAGGGTGGGTGAACTGTTTGTTGA CGAGTTCCCCGGTTTGGGACTTGGGCGGAAGAGTGCTACGGCAGGATCTAGTTTCTTGTCGCTTTGCAAGGAACAAATGCACCCGCCATTCACGTTCACC GAAACCGACGACAAAGACCTGAACCTAGTCCGCCCACTCCCAGTAATCTTCCACGACGGCCGCCTCGTCAAACGTCCGACGGCATCCACCGCCCTTCTCA TCATCCTCTGGATGCCACTTGGCATCATCCTGGCAATCCTCCGAATGGCGGTGGGGTCCATGCTCCCATTCTGGGCAAAACCCCACCTCTCCCGCTTACT TGGCGGCCAAGTAATCGTCAAGGGAAAGCCACCTCCACCTAGCTCCAACGGCGTCCTCTTCGTGTGCACCCACCGCACCCTAATGGACCCAGTAGTCCTA GCCACCGTGCTACGGCGACGTATCCCGGCAGTCACGTACTCCATCTCGCGGCTCTCAGAGATACTCTCCCCGATCCCGACCGTTCGCCTCACGAGAATCC GCGAGGTGGACGCGGCCAGGATCAAGAGCGAGCTGTCCCAGGGAGATCTCGTGGTCTGCCCCGAGGGGACCACTTGCAGGGAGCCGTTTCTGCTGCGTTT CAGCGCGCTTTTCGCGGAGCTGACGGATCGGATCGTCCCCGTGGCGATGAACTACCGGGTCGGGTTCTTCCACGCAACGACTGCCAGAGGGTGGAAGGGG CTCGACTCGATTTTCTTCTTCATGAACCCGAGGCCCATCTACGAGGTGACGTTCTTGAACCAGCTGCCGGCGGAGGCCACGTGTTCTTCAGGGAAGAGTC CGCATGACGTGGCGAATTACGTGCAGCGGATCTTGGCGGCTACTTTGGGGTTCGAGTGTACGAATTTCACGAGGAAGGATAAGTACAGGGTTCTAGCTGG GAACGACGGAACGGTGTCGTATACTTCTTTAGTTGACCAGGTCAAGAAGACGGTCAGCGCCACTAGCCCATTTTTCCATTAA
AA sequence Show only first row Show all	>Lus10004711 pacid=23174268 polypeptide=Lus10004711 locus=Lus10004711.g ID=Lus10004711.BGIv1.0 annot-version=v1.0 MASSDVVAELEGTLLKDPDPFSYFMLVSFEASGLLRFLLLLLLWPIIQLLNALGKQDAGLKVMVFVATAGVRVSEIESVARAVLPKFYMDDVDMGAWKVF SSCDKRVVVTRTPRVMVERFVKDHLRADEVIGWELVVNRFGYATGLVEERGDVDVVVRSRVGELFVDEFPGLGLGRKSATAGSSFLSLCKEQMHPPFTFT ETDDKDLNLVRPLPVIFHDGRLVKRPTASTALLIILWMPLGIILAILRMAVGSMLPFWAKPHLSRLLGGQVIVKGKPPPPSSNGVLFVCTHRTLMDPVVL ATVLRRRIPAVTYSISRLSEILSPIPTVRLTRIREVDAARIKSELSQGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKG LDSIFFFMNPRPIYEVTFLNQLPAEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSLVDQVKKTVSATSPFFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	0	1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	1.7	0.9485
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10036879 [exp]	4.9	0.9379
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	11.0	0.8854
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	11.2	0.9167
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	14.2	0.9260
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	15.0	0.9129
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	16.3	0.9158
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	20.8	0.9229
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	28.6	0.8767
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	30.8	0.8986

Compare expression of checked genes

Lus10004711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.